RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TCTAP57738 103 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 ZNF266Q14584 549 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 RRN3P1Q2M238 152 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 FFAR4Q5NUL3 377 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 C1orf158Q8N1D5 194 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 TMEM256Q8N2U0 113 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 C2CD4CQ8TF44 421 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 OR51M1Q9H341 326 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 AAMDCQ9H7C9 122 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 FUT9Q9Y231 359 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 TRAV10A0A0B4J240 114 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 NBEAP1P0C6P0 100 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 CDKN1BP46527 198 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 TAS2R45P59539 299 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 MIR17HGQ75NE6 70 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 AQP10Q96PS8 301 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 PAXXQ9BUH6 204 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 SLC25A2Q9BXI2 301 aa9.64□□□□□ -0.87
CLK3-216ENST00000564468 LOC102723971A0A1B0GUV8 181 aa9.63□□□□□ -0.87
CLK3-216ENST00000564468 CRXO43186 299 aaPredicted RBP9.63□□□□□ -0.87
CLK3-216ENST00000564468 PYYP10082 97 aa9.63□□□□□ -0.87
CLK3-216ENST00000564468 OXA1LQ15070 435 aa9.63□□□□□ -0.87
CLK3-216ENST00000564468 ACOT6Q3I5F7 207 aaPredicted RBP9.63□□□□□ -0.87
CLK3-216ENST00000564468 INO80EQ8NBZ0 244 aaPredicted RBP9.63□□□□□ -0.87
CLK3-216ENST00000564468 BLNKQ8WV28 456 aa9.63□□□□□ -0.87
CLK3-216ENST00000564468 FAM167A-AS1Q96KT0 104 aa9.63□□□□□ -0.87
CLK3-216ENST00000564468 ODF3Q96PU9 254 aa9.63□□□□□ -0.87
CLK3-216ENST00000564468 C20orf144Q9BQM9 153 aa9.63□□□□□ -0.87
CLK3-216ENST00000564468 OR7C2O60412 319 aa9.62□□□□□ -0.87
CLK3-216ENST00000564468 EMP1P54849 157 aa9.62□□□□□ -0.87
CLK3-216ENST00000564468 KHDC3LQ587J8 217 aa9.62□□□□□ -0.87
CLK3-216ENST00000564468 BAP18Q8IXM2 172 aa9.62□□□□□ -0.87
CLK3-216ENST00000564468 RNF141Q8WVD5 230 aa9.62□□□□□ -0.87
CLK3-216ENST00000564468 WFDC1Q9HC57 220 aa9.62□□□□□ -0.87
CLK3-216ENST00000564468 HYDINQ4G0P3 5121 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 TRAV12-2A0A075B6T6 113 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 A0A1W2PPV4 95 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 PRAC2D3DTV9 90 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 NDUFB4O95168 129 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 M6PRP20645 277 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 LEPP41159 167 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 C12orf74Q32Q52 190 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 Q6ZTC4 211 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 LYPD1Q8N2G4 141 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 RPP25LQ8N5L8 163 aaKnown RBP9.61□□□□□ -0.87
CLK3-216ENST00000564468 LINC00476Q8WZB0 136 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 LINC00477Q96M19 166 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 LINC01587Q99440 93 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 CELA1Q9UNI1 258 aa9.61□□□□□ -0.87
CLK3-216ENST00000564468 NPIPB6E9PJ23 425 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 OR10J4P0C629 311 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 TAS2R60P59551 318 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 ICAM4Q14773 271 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 OR2T35Q8NGX2 323 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 FXYD5Q96DB9 178 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 NIPSNAP3BQ9BS92 247 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 DKK2Q9UBU2 259 aa9.6□□□□□ -0.87
CLK3-216ENST00000564468 YTHDF2Q9Y5A9 579 aaKnown RBP9.6□□□□□ -0.87
CLK3-216ENST00000564468 FXYD6-FXYD2A0A087WZ82 144 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 DEFB131BA0A096LNP1 70 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 ZNF705GA8MUZ8 300 aaPredicted RBP9.59□□□□□ -0.87
CLK3-216ENST00000564468 IGLL5B9A064 214 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 H7BYZ3 331 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 M0R3E3 92 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 LY6G6CO95867 125 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 MBP02144 154 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 CSN1S1P47710 185 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 UBE2L3P68036 154 aaKnown RBP9.59□□□□□ -0.87
CLK3-216ENST00000564468 SERF2P84101 59 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 FAM222AQ5U5X8 452 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 PQLC2Q6ZP29 291 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 EXOC3-AS1Q8N2X6 119 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 OR2G3Q8NGZ4 309 aa9.59□□□□□ -0.87
CLK3-216ENST00000564468 PSMG3Q9BT73 122 aaPredicted RBP9.59□□□□□ -0.87
CLK3-216ENST00000564468 BORCS7-ASMTA0A0B4J1R7 106 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 LYRM9A8MSI8 78 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 CT45A10P0DMU9 189 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 Q5BKY6 102 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 FAM74A1Q5RGS3 127 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 TMEM78Q5T7P6 136 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 FAM122CQ6P4D5 195 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 ZNF493Q6ZR52 646 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 CCDC28AQ8IWP9 274 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 HSD17B11Q8NBQ5 300 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 OR10G4Q8NGN3 311 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 OR10G9Q8NGN4 311 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 OR10G7Q8NGN6 311 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 TNFSF18Q9UNG2 199 aa9.58□□□□□ -0.88
CLK3-216ENST00000564468 SLC25A5P05141 298 aaKnown RBP9.57□□□□□ -0.88
CLK3-216ENST00000564468 NMBP08949 121 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 PRB4P10163 310 aaPredicted RBP9.57□□□□□ -0.88
CLK3-216ENST00000564468 DAD1P61803 113 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 LGALS9CQ6DKI2 356 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 C9orf47Q6ZRZ4 202 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 ZNF767PQ75MW2 155 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 RXFP4Q8TDU9 374 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 GNPNAT1Q96EK6 184 aaPredicted RBP9.57□□□□□ -0.88
CLK3-216ENST00000564468 PHYHIPLQ96FC7 376 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 C16orf74Q96GX8 76 aa9.57□□□□□ -0.88
CLK3-216ENST00000564468 FAM210BQ96KR6 192 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms