RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 E5RGE8 158 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 IGKV1-17P01599 117 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 CRYGAP11844 174 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 GADD45AP24522 165 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 S100A7P31151 101 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 GALR1P47211 349 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 CIRBPQ14011 172 aaKnown RBP3.07□□□□□ -1.92
VPS35-204ENST00000563884 STEAP1BQ6NZ63 245 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 TMPRSS11AQ6ZMR5 421 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 HS3ST5Q8IZT8 346 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 NHLRC2Q8NBF2 726 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 Q8TAT8 98 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 TRUB1Q8WWH5 349 aaKnown RBP3.07□□□□□ -1.92
VPS35-204ENST00000563884 C11orf52Q96A22 123 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 DERL3Q96Q80 235 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 CHCHD5Q9BSY4 110 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 MRPL32Q9BYC8 188 aaKnown RBP3.07□□□□□ -1.92
VPS35-204ENST00000563884 SLC25A39Q9BZJ4 359 aaPredicted RBP3.07□□□□□ -1.92
VPS35-204ENST00000563884 LPAR5Q9H1C0 372 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 MED4Q9NPJ6 270 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 NSG2Q9Y328 171 aa3.07□□□□□ -1.92
VPS35-204ENST00000563884 FABP12A6NFH5 140 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 SULT1C2O00338 296 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 CHTF8P0CG12 524 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 SLC25A4P12235 298 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 NFYAP23511 347 aaPredicted RBP3.06□□□□□ -1.92
VPS35-204ENST00000563884 PRDX6P30041 224 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 OR10J1P30954 320 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 RPL5P46777 297 aaKnown RBP3.06□□□□□ -1.92
VPS35-204ENST00000563884 CCR6P51684 374 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 GTF2A1P52655 376 aaPredicted RBP3.06□□□□□ -1.92
VPS35-204ENST00000563884 OR10A3P58181 314 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 CNBPP62633 177 aaKnown RBP3.06□□□□□ -1.92
VPS35-204ENST00000563884 HIST1H1AQ02539 215 aaPredicted RBP3.06□□□□□ -1.92
VPS35-204ENST00000563884 ARL6IP1Q15041 203 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 AADACL3Q5VUY0 350 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 CST9LP1Q5W188 147 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 DPPA3Q6W0C5 159 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 OR8I2Q8N0Y5 310 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 ARL6IP6Q8N6S5 226 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 SLC35G3Q8N808 338 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 C9orf163Q8N9P6 203 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 ZNF738Q8NE65 137 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 OR4A16Q8NH70 328 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 SLC25A38Q96DW6 304 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 CENPNQ96H22 339 aaPredicted RBP3.06□□□□□ -1.92
VPS35-204ENST00000563884 OR51M1Q9H341 326 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 ARL2BPQ9Y2Y0 163 aa3.06□□□□□ -1.92
VPS35-204ENST00000563884 IGKV1OR2-108A0A075B7D4 117 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 A0A087WZ39 114 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 A0A0A6YYD4 124 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 IGKV1D-13A0A0B4J2D9 117 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 FOXI3A8MTJ6 420 aaPredicted RBP3.05□□□□□ -1.92
VPS35-204ENST00000563884 TNFSF12O43508 249 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 SPINK4O60575 86 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 IGHV3-53P01767 116 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 FABP1P07148 127 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 PFN1P07737 140 aaKnown RBP3.05□□□□□ -1.92
VPS35-204ENST00000563884 IGLC1P0CG04 106 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 RD3LP0DJH9 198 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 IGKV1-13P0DP09 117 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 DAPP51397 102 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 GUK1Q16774 197 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 HSP90B2PQ58FF3 399 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 C1orf100Q5SVJ3 147 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 HACD4Q5VWC8 232 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 ETFRF1Q6IPR1 90 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 IQCF2Q8IXL9 164 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 OR51G1Q8NGK1 321 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 OR10G9Q8NGN4 311 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 OR51H1Q8NH63 302 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 GTSF1Q8WW33 167 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 GPR82Q96P67 336 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 PDCD10Q9BUL8 212 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 PBDC1Q9BVG4 233 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 TMBIM4Q9HC24 238 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 FGF20Q9NP95 211 aaPredicted RBP3.05□□□□□ -1.92
VPS35-204ENST00000563884 ENY2Q9NPA8 101 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 URGCP-MRPS24S4R325 110 aa3.05□□□□□ -1.92
VPS35-204ENST00000563884 TRAV1-1A0A0B4J248 108 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 KLLNB2CW77 178 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 ATG12O94817 140 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 KRASP01116 189 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 DTYMKP23919 212 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 F2RP25116 425 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 TCL1AP56279 114 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 QRFPP83859 136 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 MEF2DQ14814 521 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 TMEM183BQ1AE95 376 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 FAM162BQ5T6X4 162 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 CNIH2Q6PI25 160 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 TMEM183AQ8IXX5 376 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 ZNF555Q8NEP9 628 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 OR8A1Q8NGG7 326 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 MAFIPQ8WZ33 124 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 PHYHIPQ92561 330 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 PLAC8Q9NZF1 115 aa3.04□□□□□ -1.92
VPS35-204ENST00000563884 IGHV3-64A0A075B6Q5 118 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 IGHV1OR15-1A0A075B7D0 117 aa3.03□□□□□ -1.92
VPS35-204ENST00000563884 INS-IGF2F8WCM5 200 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms