RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 PLAC8L1A1L4L8 177 aa12.49□□□□□ -0.41
NME3-205ENST00000563854 F5H768 121 aa12.49□□□□□ -0.41
NME3-205ENST00000563854 RPL29P47914 159 aaKnown RBP12.49□□□□□ -0.41
NME3-205ENST00000563854 IL15RAQ13261 267 aa12.49□□□□□ -0.41
NME3-205ENST00000563854 LRRC37A5PQ49AS3 106 aa12.49□□□□□ -0.41
NME3-205ENST00000563854 C16orf74Q96GX8 76 aa12.49□□□□□ -0.41
NME3-205ENST00000563854 HECTD4Q9Y4D8 3996 aa12.48□□□□□ -0.41
NME3-205ENST00000563854 UPK1BO75841 260 aa12.48□□□□□ -0.41
NME3-205ENST00000563854 GUK1Q16774 197 aa12.48□□□□□ -0.41
NME3-205ENST00000563854 LINC00299Q6ZSB3 139 aa12.48□□□□□ -0.41
NME3-205ENST00000563854 LINC00336Q6ZUF6 198 aa12.48□□□□□ -0.41
NME3-205ENST00000563854 SAT2Q96F10 170 aaPredicted RBP12.48□□□□□ -0.41
NME3-205ENST00000563854 ZNF586Q9NXT0 402 aa12.48□□□□□ -0.41
NME3-205ENST00000563854 H7BYZ3 331 aa12.47□□□□□ -0.41
NME3-205ENST00000563854 ATP6V1FQ16864 119 aa12.47□□□□□ -0.41
NME3-205ENST00000563854 GFI1BQ5VTD9 330 aa12.47□□□□□ -0.41
NME3-205ENST00000563854 C15orf53Q8NAA6 179 aa12.47□□□□□ -0.41
NME3-205ENST00000563854 THAP6Q8TBB0 222 aa12.47□□□□□ -0.41
NME3-205ENST00000563854 ATG101Q9BSB4 218 aa12.47□□□□□ -0.41
NME3-205ENST00000563854 NOP10Q9NPE3 64 aaKnown RBP12.47□□□□□ -0.41
NME3-205ENST00000563854 TIMM8BQ9Y5J9 83 aaPredicted RBP12.47□□□□□ -0.41
NME3-205ENST00000563854 NUDT3O95989 172 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 RLN2P04090 185 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 ATP5G1P05496 136 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 PYYP10082 97 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 ATP5G3P48201 142 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 NHLH2Q02577 135 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 GCSAMLQ5JQS6 135 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 TMEM263Q8WUH6 116 aaKnown RBP12.46□□□□□ -0.41
NME3-205ENST00000563854 BLNKQ8WV28 456 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 NPCDR1Q9BY65 106 aa12.46□□□□□ -0.41
NME3-205ENST00000563854 PRSS29PA6NIE9 313 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 M0R3E3 92 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 LEPP41159 167 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 CLINT1Q14677 625 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 RNF212Q495C1 297 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 CCDC28AQ8IWP9 274 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 OR5C1Q8NGR4 320 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 RNASE8Q8TDE3 154 aaKnown RBP12.45□□□□□ -0.42
NME3-205ENST00000563854 SLC25A31Q9H0C2 315 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 OR5AC2Q9NZP5 309 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 TIMM9Q9Y5J7 89 aa12.45□□□□□ -0.42
NME3-205ENST00000563854 TRBV19A0A075B6N1 114 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 TRAV12-3A0A0B4J271 114 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 CBY3A6NI87 242 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 NPIPB6E9PJ23 425 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 RTL8CO15255 209 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 MPDU1O75352 247 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 CT45A10P0DMU9 189 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 ERCC8Q13216 396 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 LGALS9BQ3B8N2 356 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 ZNF493Q6ZR52 646 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 C20orf144Q9BQM9 153 aa12.44□□□□□ -0.42
NME3-205ENST00000563854 HERC2O95714 4834 aa12.43□□□□□ -0.42
NME3-205ENST00000563854 E5RGE8 158 aa12.43□□□□□ -0.42
NME3-205ENST00000563854 INMT-MINDY4F8WBC2 141 aa12.43□□□□□ -0.42
NME3-205ENST00000563854 IFITM3Q01628 133 aa12.43□□□□□ -0.42
NME3-205ENST00000563854 CHAC2Q8WUX2 184 aa12.43□□□□□ -0.42
NME3-205ENST00000563854 TMEM14CQ9P0S9 112 aa12.43□□□□□ -0.42
NME3-205ENST00000563854 SNURFLB1AK76 121 aa12.42□□□□□ -0.42
NME3-205ENST00000563854 PRAF2O60831 178 aa12.42□□□□□ -0.42
NME3-205ENST00000563854 ZNF253O75346 499 aa12.42□□□□□ -0.42
NME3-205ENST00000563854 HIST1H1EP10412 219 aaKnown RBP12.42□□□□□ -0.42
NME3-205ENST00000563854 EXOC3-AS1Q8N2X6 119 aa12.42□□□□□ -0.42
NME3-205ENST00000563854 NMES1Q9C002 83 aa12.42□□□□□ -0.42
NME3-205ENST00000563854 PTTG2Q9NZH5 202 aa12.42□□□□□ -0.42
NME3-205ENST00000563854 GAGE12BA1L429 117 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 GAGE7O76087 117 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 NDUFB4O95168 129 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 GAGE12FP0CL80 117 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 GAGE12GP0CL81 117 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 GAGE12IP0CL82 117 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 MIR17HGQ75NE6 70 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 MRPL53Q96EL3 112 aaKnown RBP12.41□□□□□ -0.42
NME3-205ENST00000563854 ODF3Q96PU9 254 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 SLC25A2Q9BXI2 301 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 AAMDCQ9H7C9 122 aa12.41□□□□□ -0.42
NME3-205ENST00000563854 DNAH2Q9P225 4427 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 A6NHS1 94 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 H0YIZ8 118 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 SSNA1O43805 119 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 CYCSP99999 105 aaKnown RBP12.4□□□□□ -0.42
NME3-205ENST00000563854 OR5I1Q13606 314 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 FAM122CQ6P4D5 195 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 Q6ZR54 194 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 RNF141Q8WVD5 230 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 PRELID1Q9Y255 219 aa12.4□□□□□ -0.42
NME3-205ENST00000563854 NACAE9PAV3 2078 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 IGKV2-40A0A087WW87 121 aaPredicted RBP12.39□□□□□ -0.43
NME3-205ENST00000563854 A0A1B0GVY2 172 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 C7orf71A4D174 169 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 IGKV2D-40P01614 121 aaPredicted RBP12.39□□□□□ -0.43
NME3-205ENST00000563854 OR10J4P0C629 311 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 BTN1A1Q13410 526 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 PDE6HQ13956 83 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 ICAM4Q14773 271 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 SOHLH1Q5JUK2 328 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 PYGO2Q9BRQ0 406 aa12.39□□□□□ -0.43
NME3-205ENST00000563854 WDR61Q9GZS3 305 aaKnown RBP12.39□□□□□ -0.43
NME3-205ENST00000563854 KCNIP2Q9NS61 270 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms