RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 RBAKDNA6NC62 111 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 DIRC3C9JPN6 131 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 K7EQM0 130 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 TSPAN4O14817 238 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 CEBPGP53567 150 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 TMEM183BQ1AE95 376 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 LINC00482Q8N8I6 264 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 OR2K2Q8NGT1 345 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 TMEM158Q8WZ71 300 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 C16orf92Q96LL3 132 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 DERL1Q9BUN8 251 aa10.5□□□□□ -0.73
CLK3-209ENST00000562670 TRBV20OR9-2A0A075B6H5 130 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 K7EQG2 157 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 M0R3E3 92 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 APOC3P02656 99 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 PF4P02776 101 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 GNG5P63218 68 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 PAFAH1B2P68402 229 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 PSG3Q16557 428 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 GUCA2BQ16661 112 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 DEFB114Q30KQ6 69 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 DYNLRB2Q8TF09 96 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 IGF2BP2-AS1Q96M15 143 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 MS4A6AQ9H2W1 248 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 SDF2L1Q9HCN8 221 aa10.49□□□□□ -0.73
CLK3-209ENST00000562670 SNAPINO95295 136 aa10.48□□□□□ -0.73
CLK3-209ENST00000562670 ID1P41134 155 aa10.48□□□□□ -0.73
CLK3-209ENST00000562670 RPL11P62913 178 aaKnown RBP10.48□□□□□ -0.73
CLK3-209ENST00000562670 TMEM241Q24JQ0 296 aa10.48□□□□□ -0.73
CLK3-209ENST00000562670 ZNF674Q2M3X9 581 aa10.48□□□□□ -0.73
CLK3-209ENST00000562670 LCN12Q6JVE5 192 aa10.48□□□□□ -0.73
CLK3-209ENST00000562670 TVP23CQ96ET8 276 aa10.48□□□□□ -0.73
CLK3-209ENST00000562670 SPAG8Q99932 426 aaPredicted RBP10.48□□□□□ -0.73
CLK3-209ENST00000562670 B4DEV8 164 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 LTAP01374 205 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 IGLV2-11P01706 119 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 GNG4P50150 75 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 UBE2G1P62253 170 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 RHEBQ15382 184 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 CENPWQ5EE01 88 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 GOLT1AQ6ZVE7 132 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 Q86TA4 180 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 TMEM61Q8N0U2 210 aa10.47□□□□□ -0.73
CLK3-209ENST00000562670 TENM1Q9UKZ4 2725 aa10.46□□□□□ -0.73
CLK3-209ENST00000562670 IGLV1-51P01701 117 aa10.46□□□□□ -0.73
CLK3-209ENST00000562670 SNRPD3P62318 126 aaKnown RBP10.46□□□□□ -0.73
CLK3-209ENST00000562670 SHISA2Q6UWI4 295 aa10.46□□□□□ -0.73
CLK3-209ENST00000562670 RBPMS2Q6ZRY4 209 aaKnown RBP10.46□□□□□ -0.73
CLK3-209ENST00000562670 LINC01551Q86U37 167 aa10.46□□□□□ -0.73
CLK3-209ENST00000562670 CLRN3Q8NCR9 226 aa10.46□□□□□ -0.73
CLK3-209ENST00000562670 PPP1R14DQ9NXH3 145 aa10.46□□□□□ -0.73
CLK3-209ENST00000562670 DNASE2O00115 360 aaPredicted RBP10.45□□□□□ -0.74
CLK3-209ENST00000562670 HLA-DMBP28068 263 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 INSL3P51460 131 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 RPL23P62829 140 aaKnown RBP10.45□□□□□ -0.74
CLK3-209ENST00000562670 FLI1Q01543 452 aaPredicted RBP10.45□□□□□ -0.74
CLK3-209ENST00000562670 CD300EQ496F6 205 aaPredicted RBP10.45□□□□□ -0.74
CLK3-209ENST00000562670 COX8CQ7Z4L0 72 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 RNF182Q8N6D2 247 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 C20orf173Q96LM9 149 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 LINC00479Q96M42 142 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 MLST8Q9BVC4 326 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 RPH3ALQ9UNE2 315 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 ZFP30Q9Y2G7 519 aa10.45□□□□□ -0.74
CLK3-209ENST00000562670 OR4C46A6NHA9 309 aa10.44□□□□□ -0.74
CLK3-209ENST00000562670 IGLV2-8P01709 118 aa10.44□□□□□ -0.74
CLK3-209ENST00000562670 IGFL4Q6B9Z1 124 aa10.44□□□□□ -0.74
CLK3-209ENST00000562670 C12orf54Q6X4T0 127 aa10.44□□□□□ -0.74
CLK3-209ENST00000562670 C9orf47Q6ZRZ4 202 aa10.44□□□□□ -0.74
CLK3-209ENST00000562670 ZNF738Q8NE65 137 aa10.44□□□□□ -0.74
CLK3-209ENST00000562670 LENEPQ9Y5L5 61 aa10.44□□□□□ -0.74
CLK3-209ENST00000562670 FBN1P35555 2871 aaKnown RBP10.43□□□□□ -0.74
CLK3-209ENST00000562670 IGKV3-7A0A075B6H7 116 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 IGKV2-40A0A087WW87 121 aaPredicted RBP10.43□□□□□ -0.74
CLK3-209ENST00000562670 A0A087WWC5 75 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 TRAV34A0A0B4J273 112 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 TRBV7-9A0A0J9YWB2 115 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 ZNF705FA8MVS1 300 aaPredicted RBP10.43□□□□□ -0.74
CLK3-209ENST00000562670 NPIPB6E9PJ23 425 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 M0R036 132 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 SAP30O75446 220 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 IGKV2D-40P01614 121 aaPredicted RBP10.43□□□□□ -0.74
CLK3-209ENST00000562670 BAGE2Q86Y30 109 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 TMEM183AQ8IXX5 376 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 GBGT1Q8N5D6 347 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 C3orf56Q8N813 242 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 WFDC9Q8NEX5 89 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 ISOC2Q96AB3 205 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 FAM110AQ9BQ89 295 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 MCRIP2Q9BUT9 160 aaKnown RBP10.43□□□□□ -0.74
CLK3-209ENST00000562670 BIN3Q9NQY0 253 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 PSG8Q9UQ74 426 aa10.43□□□□□ -0.74
CLK3-209ENST00000562670 ZNF256Q9Y2P7 627 aaPredicted RBP10.43□□□□□ -0.74
CLK3-209ENST00000562670 TRAV8-1A0A0A6YYK1 113 aa10.42□□□□□ -0.74
CLK3-209ENST00000562670 PRAC2D3DTV9 90 aa10.42□□□□□ -0.74
CLK3-209ENST00000562670 GCGP01275 180 aa10.42□□□□□ -0.74
CLK3-209ENST00000562670 ADIRFQ15847 76 aa10.42□□□□□ -0.74
CLK3-209ENST00000562670 SAPCD1Q5SSQ6 148 aa10.42□□□□□ -0.74
CLK3-209ENST00000562670 OCC1Q8TAD7 63 aa10.42□□□□□ -0.74
CLK3-209ENST00000562670 LINC00477Q96M19 166 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 210.7 ms