RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TRGV4A0A0C4DH28 118 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 NDUFA4O00483 81 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 GZMBP10144 247 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 APRG1Q8IVJ8 170 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 DERL1Q9BUN8 251 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 TRGV1A0A0A0MS02 117 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 A0A1W2PRE2 83 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 TMEM250H0YL14 139 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 M0R2Z0 102 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 CRISP2P16562 243 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 YPEL3P61236 119 aaPredicted RBP7.23□□□□□ -1.25
VPS39-205ENST00000562258 CFHR3Q02985 330 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 NPBQ8NG41 125 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 ANAPC16Q96DE5 110 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 A0A087X0M5 115 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 A0A1B0GX30 115 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 ISLRO14498 428 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 HLA-DMBP28068 263 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 SHANK2-AS3Q9BTD1 123 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 CYTL1Q9NRR1 136 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 ZMAT5Q9UDW3 170 aaKnown RBP7.22□□□□□ -1.25
VPS39-205ENST00000562258 H3BVH4 76 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 K7EIM0 57 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 IGLV2-14P01704 120 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 BTF3P20290 206 aaKnown RBP7.22□□□□□ -1.25
VPS39-205ENST00000562258 AMTP48728 403 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 FOXE3Q13461 319 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 SAMD13Q5VXD3 122 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 ZNF491Q8N8L2 437 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 MRPL27Q9P0M9 148 aaKnown RBP7.22□□□□□ -1.25
VPS39-205ENST00000562258 RAI1Q7Z5J4 1906 aaPredicted RBP7.22□□□□□ -1.25
VPS39-205ENST00000562258 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.22□□□□□ -1.25
VPS39-205ENST00000562258 TCTAP57738 103 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 SRSF1Q07955 248 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS39-205ENST00000562258 NBEAQ8NFP9 2946 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 SDF2L1Q9HCN8 221 aa7.22□□□□□ -1.25
VPS39-205ENST00000562258 LOC400499M0QZD8 3231 aa7.21□□□□□ -1.25
VPS39-205ENST00000562258 TRAV21A0A0B4J279 112 aa7.21□□□□□ -1.25
VPS39-205ENST00000562258 ODF3BA8MYP8 253 aa7.21□□□□□ -1.25
VPS39-205ENST00000562258 OR5AL1P0C617 328 aa7.21□□□□□ -1.25
VPS39-205ENST00000562258 PSG3Q16557 428 aa7.21□□□□□ -1.25
VPS39-205ENST00000562258 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.21□□□□□ -1.25
VPS39-205ENST00000562258 ZNF256Q9Y2P7 627 aaPredicted RBP7.21□□□□□ -1.25
VPS39-205ENST00000562258 UBR5O95071 2799 aaPredicted RBP7.21□□□□□ -1.25
VPS39-205ENST00000562258 IGKV1-17P01599 117 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 CBLN1P23435 193 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 C17orf77Q96MU5 243 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 MRPL36Q9P0J6 103 aaKnown RBP7.21□□□□□ -1.26
VPS39-205ENST00000562258 TRBV20OR9-2A0A075B6H5 130 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 IGLV2-23P01705 113 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 CTSGP08311 255 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 ZNF138P52744 262 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 DEFB1P60022 68 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 OCC1Q8TAD7 63 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 SMPXQ9UHP9 88 aa7.21□□□□□ -1.26
VPS39-205ENST00000562258 IGHV7-4-1A0A0J9YVY3 117 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 TCRAP04437 139 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 CD5P06127 495 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 SRP19P09132 144 aaKnown RBP7.2□□□□□ -1.26
VPS39-205ENST00000562258 GP9P14770 177 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 SRSF3P84103 164 aaKnown RBP7.2□□□□□ -1.26
VPS39-205ENST00000562258 FAM162BQ5T6X4 162 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 SFRP2Q96HF1 295 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 MEGF9Q9H1U4 602 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 APCSP02743 223 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 ZNF506Q5JVG8 444 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 WDR73Q6P4I2 378 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 LINC01006Q8NI28 216 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 ZNF586Q9NXT0 402 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 KLK9Q9UKQ9 250 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 ARL2-SNX15V9GYD0 113 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 NOTCH1P46531 2555 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 IGLV11-55A0A075B6I3 123 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 TRGC1P0CF51 173 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 FER1L6-AS1Q8NA97 138 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 OR9G4Q8NGQ1 327 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 CFHR4Q92496 578 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 DPH3Q96FX2 82 aa7.2□□□□□ -1.26
VPS39-205ENST00000562258 MCRIP2Q9BUT9 160 aaKnown RBP7.2□□□□□ -1.26
VPS39-205ENST00000562258 UBE2L6O14933 153 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 BRWD1-AS2P59051 145 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 ZNF415Q09FC8 603 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 DLX4Q92988 240 aaPredicted RBP7.19□□□□□ -1.26
VPS39-205ENST00000562258 SMDT1Q9H4I9 107 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 PMS2P11Q13670 270 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 UNQ9165/PRO28630Q6UXU0 137 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 TNFRSF18Q9Y5U5 241 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 TEX22C9J3V5 150 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 PRB2P02812 416 aaPredicted RBP7.19□□□□□ -1.26
VPS39-205ENST00000562258 FOSL1P15407 271 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 CMC4P56277 68 aaPredicted RBP7.19□□□□□ -1.26
VPS39-205ENST00000562258 RPS20P60866 119 aaKnown RBP7.19□□□□□ -1.26
VPS39-205ENST00000562258 DEFA6Q01524 100 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 ATRAIDQ6UW56 229 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 FMC1Q96HJ9 113 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 KCNS1Q96KK3 526 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 YTHDF2Q9Y5A9 579 aaKnown RBP7.19□□□□□ -1.26
VPS39-205ENST00000562258 HIGD1CA8MV81 97 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 TCAPO15273 167 aa7.19□□□□□ -1.26
VPS39-205ENST00000562258 NDUFA3O95167 84 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms