RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PXMP4Q9Y6I8 212 aa7.19□□□□□ -1.26
LDLR-214ENST00000560628 ATP5G1P05496 136 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 CT45A10P0DMU9 189 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 S100A11P31949 105 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 ATP5G3P48201 142 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 SULT1A1P50225 295 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 VWC2Q2TAL6 325 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 MZT2BQ6NZ67 158 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 C16orf74Q96GX8 76 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 LYRM2Q9NU23 88 aaPredicted RBP7.18□□□□□ -1.26
LDLR-214ENST00000560628 SLC39A9Q9NUM3 307 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 ZNF586Q9NXT0 402 aa7.18□□□□□ -1.26
LDLR-214ENST00000560628 TRAV12-3A0A0B4J271 114 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 H7BYZ3 331 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 SIX6O95475 246 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 FGF7P21781 194 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 RPL29P47914 159 aaKnown RBP7.17□□□□□ -1.26
LDLR-214ENST00000560628 ERCC8Q13216 396 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 GUK1Q16774 197 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 GFI1BQ5VTD9 330 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 ZNF493Q6ZR52 646 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 STX12Q86Y82 276 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 CCDC28AQ8IWP9 274 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 RNASE8Q8TDE3 154 aaKnown RBP7.17□□□□□ -1.26
LDLR-214ENST00000560628 PFDN5Q99471 154 aa7.17□□□□□ -1.26
LDLR-214ENST00000560628 GPN1Q9HCN4 374 aaPredicted RBP7.17□□□□□ -1.26
LDLR-214ENST00000560628 HBG1P69891 147 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 HBG2P69892 147 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 NHLH2Q02577 135 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 OR5I1Q13606 314 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 ATP6V1FQ16864 119 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 GCSAMLQ5JQS6 135 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 C1orf134Q5TEV5 83 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 TMEM263Q8WUH6 116 aaKnown RBP7.16□□□□□ -1.26
LDLR-214ENST00000560628 TIMM9Q9Y5J7 89 aa7.16□□□□□ -1.26
LDLR-214ENST00000560628 TRBV19A0A075B6N1 114 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 GAGE12BA1L429 117 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 NPIPB6E9PJ23 425 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 M0R3E3 92 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 GAGE7O76087 117 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 GAGE12FP0CL80 117 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 GAGE12GP0CL81 117 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 GAGE12IP0CL82 117 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 PYYP10082 97 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 HIST1H1EP10412 219 aaKnown RBP7.15□□□□□ -1.26
LDLR-214ENST00000560628 LEPP41159 167 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 ASAH1Q13510 395 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 SOHLH1Q5JUK2 328 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 THAP6Q8TBB0 222 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 CHAC2Q8WUX2 184 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 BLNKQ8WV28 456 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 RNF141Q8WVD5 230 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 C20orf144Q9BQM9 153 aa7.15□□□□□ -1.26
LDLR-214ENST00000560628 NACAE9PAV3 2078 aa7.15□□□□□ -1.27
LDLR-214ENST00000560628 A0A0J9YY99 117 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 SNURFLB1AK76 121 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 NDUFB4O95168 129 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 CCL18P55774 89 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 FAM3BP58499 235 aaPredicted RBP7.14□□□□□ -1.27
LDLR-214ENST00000560628 CLINT1Q14677 625 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 LRRC37A5PQ49AS3 106 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 EXOC3-AS1Q8N2X6 119 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 ZNRF2Q8NHG8 242 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 ENKURQ8TC29 256 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 S100ZQ8WXG8 99 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 NPCDR1Q9BY65 106 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 AGPAT4-IT1Q9H0P7 198 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 OR5AC2Q9NZP5 309 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 TMEM14CQ9P0S9 112 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 LINC00588Q9Y4M8 146 aa7.14□□□□□ -1.27
LDLR-214ENST00000560628 HECTD4Q9Y4D8 3996 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 TRAV26-1A0A087WT03 109 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 NBDYA0A0U1RRE5 68 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 H0YIZ8 118 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 ZNF253O75346 499 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 MPDU1O75352 247 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 RLN2P04090 185 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 HOXA5P20719 270 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 RNASE4P34096 147 aaKnown RBP7.13□□□□□ -1.27
LDLR-214ENST00000560628 IFITM3Q01628 133 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 CD300CQ08708 224 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 MIR17HGQ75NE6 70 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 SSX7Q7RTT5 188 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 LINC00612Q8N6U2 182 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 OR5C1Q8NGR4 320 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 GNPNAT1Q96EK6 184 aaPredicted RBP7.13□□□□□ -1.27
LDLR-214ENST00000560628 MRPL53Q96EL3 112 aaKnown RBP7.13□□□□□ -1.27
LDLR-214ENST00000560628 LINC00477Q96M19 166 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 ODF3Q96PU9 254 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 SLC25A2Q9BXI2 301 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 SLC25A31Q9H0C2 315 aa7.13□□□□□ -1.27
LDLR-214ENST00000560628 HERC2O95714 4834 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 IGKV2-40A0A087WW87 121 aaPredicted RBP7.12□□□□□ -1.27
LDLR-214ENST00000560628 C7orf71A4D174 169 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 E5RGE8 158 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 UPK1BO75841 260 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 IGKV2D-40P01614 121 aaPredicted RBP7.12□□□□□ -1.27
LDLR-214ENST00000560628 SLC25A5P05141 298 aaKnown RBP7.12□□□□□ -1.27
LDLR-214ENST00000560628 MED14OSP0DP75 135 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 M6PRP20645 277 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms