RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 LOC102723971A0A1B0GUV8 181 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 PGPA6NDG6 321 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 FAM74A7A6NL05 159 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 FRMD6-AS1P0C7T7 363 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 IGLC2P0DOY2 106 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 CEBPGP53567 150 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 SUMO1P63165 101 aaKnown RBP8.88□□□□□ -0.99
LDLR-212ENST00000560467 EIF4E3Q8N5X7 224 aaKnown RBP8.88□□□□□ -0.99
LDLR-212ENST00000560467 GLMPQ8WWB7 406 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 ZNF414Q96IQ9 312 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 LYSTQ99698 3801 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 SLC35B3Q9H1N7 401 aa8.88□□□□□ -0.99
LDLR-212ENST00000560467 H3BQ15 152 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 NDUFS6O75380 124 aaKnown RBP8.87□□□□□ -0.99
LDLR-212ENST00000560467 SAP30O75446 220 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 SLC25A5P05141 298 aaKnown RBP8.87□□□□□ -0.99
LDLR-212ENST00000560467 S100A9P06702 114 aaKnown RBP8.87□□□□□ -0.99
LDLR-212ENST00000560467 CMC4P56277 68 aaPredicted RBP8.87□□□□□ -0.99
LDLR-212ENST00000560467 SNRPD3P62318 126 aaKnown RBP8.87□□□□□ -0.99
LDLR-212ENST00000560467 SOHLH1Q5JUK2 328 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 SLC7A5P1Q8MH63 180 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 HIST1H2BAQ96A08 127 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 ZNF503Q96F45 646 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 RARRES2Q99969 163 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 Q9H3A6 140 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 ZNF586Q9NXT0 402 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 SIGLEC8Q9NYZ4 499 aa8.87□□□□□ -0.99
LDLR-212ENST00000560467 TRAV25A0A0B4J276 109 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 KRBOX1C9JBD0 128 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 TMEM250H0YL14 139 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 H3BTX0 84 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 ISLRO14498 428 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 CSN3P07498 182 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 SNRPCP09234 159 aaKnown RBP8.86□□□□□ -0.99
LDLR-212ENST00000560467 INSL3P51460 131 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 ICAM4Q14773 271 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 ARL6IP6Q8N6S5 226 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 C5orf17Q8NAS9 161 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 MLXQ9UH92 298 aa8.86□□□□□ -0.99
LDLR-212ENST00000560467 SORL1Q92673 2214 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 IGKV3-7A0A075B6H7 116 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 SERTM2A0A1B0GWG4 89 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 OR4C46A6NHA9 309 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 CNN1P51911 297 aaKnown RBP8.85□□□□□ -0.99
LDLR-212ENST00000560467 FAM74A3Q4VXF1 159 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 ADAMTSL5Q6ZMM2 481 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 WFDC3Q8IUB2 231 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 OR2K2Q8NGT1 345 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 EPDR1Q9UM22 224 aa8.85□□□□□ -0.99
LDLR-212ENST00000560467 YTHDF2Q9Y5A9 579 aaKnown RBP8.85□□□□□ -0.99
LDLR-212ENST00000560467 CSMD3Q7Z407 3707 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 TRAV2A0A0B4J234 112 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 FBLL1A6NHQ2 334 aaKnown RBP8.84□□□□□ -0.99
LDLR-212ENST00000560467 F8W036 122 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 MRPS12O15235 138 aaKnown RBP8.84□□□□□ -0.99
LDLR-212ENST00000560467 SFTA3P0C7M3 94 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 TFPI2P48307 235 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 UBE2G1P62253 170 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 DEFB114Q30KQ6 69 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 GBGT1Q8N5D6 347 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 MRPL53Q96EL3 112 aaKnown RBP8.84□□□□□ -0.99
LDLR-212ENST00000560467 LINC00052Q96N35 136 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 ATG101Q9BSB4 218 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 MS4A6AQ9H2W1 248 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 ZMAT4Q9H898 229 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 ZNF331Q9NQX6 463 aaPredicted RBP8.84□□□□□ -0.99
LDLR-212ENST00000560467 RPH3ALQ9UNE2 315 aa8.84□□□□□ -0.99
LDLR-212ENST00000560467 TMEM218A2RU14 115 aa8.83□□□□□ -1
LDLR-212ENST00000560467 PEX7O00628 323 aa8.83□□□□□ -1
LDLR-212ENST00000560467 TSPAN4O14817 238 aa8.83□□□□□ -1
LDLR-212ENST00000560467 AKR1C3P42330 323 aa8.83□□□□□ -1
LDLR-212ENST00000560467 ATP5G3P48201 142 aa8.83□□□□□ -1
LDLR-212ENST00000560467 CD81P60033 236 aa8.83□□□□□ -1
LDLR-212ENST00000560467 GUCA2BQ16661 112 aa8.83□□□□□ -1
LDLR-212ENST00000560467 ZNF674Q2M3X9 581 aa8.83□□□□□ -1
LDLR-212ENST00000560467 LCN12Q6JVE5 192 aa8.83□□□□□ -1
LDLR-212ENST00000560467 EXOC3-AS1Q8N2X6 119 aa8.83□□□□□ -1
LDLR-212ENST00000560467 CYB561D1Q8N8Q1 229 aa8.83□□□□□ -1
LDLR-212ENST00000560467 ZNF738Q8NE65 137 aa8.83□□□□□ -1
LDLR-212ENST00000560467 C17orf77Q96MU5 243 aa8.83□□□□□ -1
LDLR-212ENST00000560467 SPAG8Q99932 426 aaPredicted RBP8.83□□□□□ -1
LDLR-212ENST00000560467 NIPSNAP3BQ9BS92 247 aa8.83□□□□□ -1
LDLR-212ENST00000560467 ZNF727A8MUV8 499 aa8.82□□□□□ -1
LDLR-212ENST00000560467 GGTLC3B5MD39 225 aa8.82□□□□□ -1
LDLR-212ENST00000560467 NDUFB4O95168 129 aa8.82□□□□□ -1
LDLR-212ENST00000560467 SRP19P09132 144 aaKnown RBP8.82□□□□□ -1
LDLR-212ENST00000560467 PSG3Q16557 428 aa8.82□□□□□ -1
LDLR-212ENST00000560467 FAM90A2PQ658T7 463 aa8.82□□□□□ -1
LDLR-212ENST00000560467 EBLN2Q6P2I7 272 aa8.82□□□□□ -1
LDLR-212ENST00000560467 OR10J6PQ8NGY7 276 aa8.82□□□□□ -1
LDLR-212ENST00000560467 SMIM7Q9BQ49 75 aa8.82□□□□□ -1
LDLR-212ENST00000560467 TM2D3Q9BRN9 247 aa8.82□□□□□ -1
LDLR-212ENST00000560467 EDA2RQ9HAV5 297 aa8.82□□□□□ -1
LDLR-212ENST00000560467 PPP1R14DQ9NXH3 145 aa8.82□□□□□ -1
LDLR-212ENST00000560467 TCRAP04437 139 aa8.81□□□□□ -1
LDLR-212ENST00000560467 GNG4P50150 75 aa8.81□□□□□ -1
LDLR-212ENST00000560467 SRSF3P84103 164 aaKnown RBP8.81□□□□□ -1
LDLR-212ENST00000560467 CD300EQ496F6 205 aaPredicted RBP8.81□□□□□ -1
LDLR-212ENST00000560467 CCDC28AQ8IWP9 274 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms