RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 PARLQ9H300 379 aa9.16□□□□□ -0.94
HERC1-205ENST00000559886 SORL1Q92673 2214 aa9.16□□□□□ -0.94
HERC1-205ENST00000559886 TSPAN4O14817 238 aa9.16□□□□□ -0.94
HERC1-205ENST00000559886 S100A1P23297 94 aa9.16□□□□□ -0.94
HERC1-205ENST00000559886 CD300EQ496F6 205 aaPredicted RBP9.16□□□□□ -0.94
HERC1-205ENST00000559886 RBPMS2Q6ZRY4 209 aaKnown RBP9.16□□□□□ -0.94
HERC1-205ENST00000559886 MRPL53Q96EL3 112 aaKnown RBP9.16□□□□□ -0.94
HERC1-205ENST00000559886 DIRC3C9JPN6 131 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 K7EQG2 157 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 SAP30O75446 220 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 CSN1S1P47710 185 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 PAFAH1B2P68402 229 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 PSG3Q16557 428 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 FAM74A3Q4VXF1 159 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 LCN12Q6JVE5 192 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 LURAP1LQ8IV03 231 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 RPH3ALQ9UNE2 315 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 CARHSP1Q9Y2V2 147 aaKnown RBP9.15□□□□□ -0.94
HERC1-205ENST00000559886 TRAV25A0A0B4J276 109 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 DNASE2O00115 360 aaPredicted RBP9.15□□□□□ -0.94
HERC1-205ENST00000559886 ZNF674Q2M3X9 581 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 WFDC3Q8IUB2 231 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 C20orf173Q96LM9 149 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 SMIM7Q9BQ49 75 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 KLF12Q9Y4X4 402 aa9.15□□□□□ -0.94
HERC1-205ENST00000559886 TRAV2A0A0B4J234 112 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 ZNF727A8MUV8 499 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 ZNF705FA8MVS1 300 aaPredicted RBP9.14□□□□□ -0.95
HERC1-205ENST00000559886 ID1P41134 155 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 RPL35P42766 123 aaKnown RBP9.14□□□□□ -0.95
HERC1-205ENST00000559886 LINC00479Q96M42 142 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 IGLV1-51P01701 117 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 AKR1C3P42330 323 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 TFPI2P48307 235 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 CNN1P51911 297 aaKnown RBP9.14□□□□□ -0.95
HERC1-205ENST00000559886 GOLT1AQ6ZVE7 132 aa9.14□□□□□ -0.95
HERC1-205ENST00000559886 TRRAPQ9Y4A5 3859 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 SERTM2A0A1B0GWG4 89 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 TMEM183BQ1AE95 376 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 SPATA3Q8NHX4 192 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 SPAG8Q99932 426 aaPredicted RBP9.13□□□□□ -0.95
HERC1-205ENST00000559886 TRBV20OR9-2A0A075B6H5 130 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 TRAV34A0A0B4J273 112 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 IZUMO1RA6ND01 250 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 PRAC2D3DTV9 90 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 PRB4P10163 310 aaPredicted RBP9.13□□□□□ -0.95
HERC1-205ENST00000559886 TAS2R60P59551 318 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 FAM24BQ8N5W8 94 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 WFDC9Q8NEX5 89 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 NIPSNAP3BQ9BS92 247 aa9.13□□□□□ -0.95
HERC1-205ENST00000559886 K7EQM0 130 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 IGLV2-11P01706 119 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 APOC3P02656 99 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 S100A9P06702 114 aaKnown RBP9.12□□□□□ -0.95
HERC1-205ENST00000559886 SNRPD3P62318 126 aaKnown RBP9.12□□□□□ -0.95
HERC1-205ENST00000559886 TMEM75Q8N9X5 138 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 OR2K2Q8NGT1 345 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 FMC1Q96HJ9 113 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 IGKV2-40A0A087WW87 121 aaPredicted RBP9.12□□□□□ -0.95
HERC1-205ENST00000559886 C9JCJ5 164 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 IGKV2D-40P01614 121 aaPredicted RBP9.12□□□□□ -0.95
HERC1-205ENST00000559886 GUCA2BQ16661 112 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 TMEM241Q24JQ0 296 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 ZNF738Q8NE65 137 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 NAT8Q9UHE5 227 aa9.12□□□□□ -0.95
HERC1-205ENST00000559886 ZNF256Q9Y2P7 627 aaPredicted RBP9.12□□□□□ -0.95
HERC1-205ENST00000559886 NOTCH3Q9UM47 2321 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 TRAV8-1A0A0A6YYK1 113 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 RBAKDNA6NC62 111 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 ZNF688P0C7X2 276 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 INSL3P51460 131 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 UBE2G1P62253 170 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 SGK494Q96LW2 274 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 IGF2BP2-AS1Q96M15 143 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 SDF2L1Q9HCN8 221 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 TRBV6-1A0A0K0K1D8 114 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 OR4C46A6NHA9 309 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 CD33P20138 364 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 CENPWQ5EE01 88 aa9.11□□□□□ -0.95
HERC1-205ENST00000559886 FBLL1A6NHQ2 334 aaKnown RBP9.1□□□□□ -0.95
HERC1-205ENST00000559886 GNG4P50150 75 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 FLI1Q01543 452 aaPredicted RBP9.1□□□□□ -0.95
HERC1-205ENST00000559886 PSMG4Q5JS54 123 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 C9orf66Q5T8R8 295 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 SVBPQ8N300 66 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 TVP23CQ96ET8 276 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 VGLL1Q99990 258 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 LY96Q9Y6Y9 160 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 LTAP01374 205 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 Q86TA4 180 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 MDFIQ99750 246 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 MCRIP2Q9BUT9 160 aaKnown RBP9.1□□□□□ -0.95
HERC1-205ENST00000559886 PSG8Q9UQ74 426 aa9.1□□□□□ -0.95
HERC1-205ENST00000559886 PGPEP1LA6NFU8 196 aa9.09□□□□□ -0.95
HERC1-205ENST00000559886 DEFB1P60022 68 aa9.09□□□□□ -0.95
HERC1-205ENST00000559886 PNRC1Q12796 327 aaPredicted RBP9.09□□□□□ -0.95
HERC1-205ENST00000559886 C9orf47Q6ZRZ4 202 aa9.09□□□□□ -0.95
HERC1-205ENST00000559886 BAGE2Q86Y30 109 aa9.09□□□□□ -0.95
HERC1-205ENST00000559886 OCC1Q8TAD7 63 aa9.09□□□□□ -0.95
HERC1-205ENST00000559886 AGRNO00468 2067 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms