RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SRRM4A7MD48 611 aaKnown RBP5.74□□□□□ -1.49
USP3-210ENST00000559192 FNDC10F2Z333 226 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 MMP23AO75900 390 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 SPRNQ5BIV9 151 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 ZC2HC1BQ5TFG8 222 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 RPRMLQ8N4K4 120 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 TMEM133Q9H2Q1 129 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 DOCK8Q8NF50 2099 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 CRYBA4P53673 196 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 HERV-K104P63124 156 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 RHOGP84095 191 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 MYO7BQ6PIF6 2116 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 TMEM167AQ8TBQ9 72 aa5.74□□□□□ -1.49
USP3-210ENST00000559192 A0A1W2PPM0 123 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 C11orf53Q8IXP5 236 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 TRGV9Q99603 122 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 TPSG1Q9NRR2 321 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 A0A1W2PPI3 338 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 DIAPH2-AS1Q14236 149 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 CT83Q5H943 113 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 NDUFA4L2Q9NRX3 87 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 INAFM2P0DMQ5 153 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 C15orf53Q8NAA6 179 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 FXYD5Q96DB9 178 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 DNAJC30Q96LL9 226 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 IGF2BP2-AS1Q96M15 143 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 C21orf62Q9NYP8 219 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 IGKV3-20P01619 116 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 FOXC1Q12948 553 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 CCDC144NLQ6NUI1 221 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 LYPD2Q6UXB3 125 aa5.73□□□□□ -1.49
USP3-210ENST00000559192 CHD3Q12873 2000 aaKnown RBP5.73□□□□□ -1.49
USP3-210ENST00000559192 SYNJ2BPP57105 145 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 TMEM86BQ8N661 226 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 LINC01560Q8TB33 94 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 GFRA4Q9GZZ7 299 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 FER1L5A0AVI2 2057 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 CD28P10747 220 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 LAGE3Q14657 143 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 RBMY1FQ15415 496 aaKnown RBP5.72□□□□□ -1.49
USP3-210ENST00000559192 Q8TCH9 128 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 DPH3Q96FX2 82 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 TP53TG3Q9ULZ0 132 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 H3BMG7 143 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 TCF15Q12870 199 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 FAM231DQ6ZW35 169 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 OVOL2Q9BRP0 275 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 IGHV2-70DA0A0C4DH43 119 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 COX8AP10176 69 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 LINC00158P58513 81 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 WT1-ASQ06250 92 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 KLF5Q13887 457 aaPredicted RBP5.72□□□□□ -1.49
USP3-210ENST00000559192 PVRIGQ6DKI7 326 aa5.72□□□□□ -1.49
USP3-210ENST00000559192 TRAV13-1A0A0B4J241 112 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 K7ERJ3 54 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 TIMM23O14925 209 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 PLEKHB2Q96CS7 222 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 IGHV3OR16-10A0A075B7F0 116 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 FABP5P3A8MUU1 101 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 SOCS3O14543 225 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 FAM106CPP0CH98 169 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 IGHV1-8P0DP01 117 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 CLEC19AQ6UXS0 136 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 ZNF492Q9P255 531 aa5.71□□□□□ -1.49
USP3-210ENST00000559192 SHANK1Q9Y566 2161 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 ADAMTS9Q9P2N4 1935 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 NBR2O15453 112 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 ANKRD29Q8N6D5 301 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 IGHV1-3A0A0C4DH29 117 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 COL8A2P25067 703 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 UTF1Q5T230 341 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 MRPL55Q7Z7F7 128 aaKnown RBP5.71□□□□□ -1.5
USP3-210ENST00000559192 COLQQ9Y215 455 aaPredicted RBP5.71□□□□□ -1.5
USP3-210ENST00000559192 RNF114Q9Y508 228 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 PAX4O43316 350 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 SAP30O75446 220 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 WIPF2Q8TF74 440 aaPredicted RBP5.71□□□□□ -1.5
USP3-210ENST00000559192 BRK1Q8WUW1 75 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 TMEM158Q8WZ71 300 aa5.71□□□□□ -1.5
USP3-210ENST00000559192 HAX1O00165 279 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 BRWD1-AS2P59051 145 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 JPT2Q9H910 190 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 LINC01549A6NIU2 74 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 RNASE4P34096 147 aaKnown RBP5.7□□□□□ -1.5
USP3-210ENST00000559192 ERCC8Q13216 396 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 ZNF833PQ6ZTB9 187 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 GLMPQ8WWB7 406 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 PRADC1Q9BSG0 188 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 NDUFB8O95169 186 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 TCTEX1D4Q5JR98 221 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 AMTNQ6UX39 209 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 DPM3Q9P2X0 92 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 CEP290O15078 2479 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 APOBEC3AP31941 199 aaPredicted RBP5.7□□□□□ -1.5
USP3-210ENST00000559192 KLRD1Q13241 179 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 DUX5Q96PT3 197 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 UBL5Q9BZL1 73 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 SCRT2Q9NQ03 307 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 SIGLEC8Q9NYZ4 499 aa5.7□□□□□ -1.5
USP3-210ENST00000559192 SIGLEC9Q9Y336 463 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms