RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CNN1P51911 297 aaKnown RBP7□□□□□ -1.29
SCFD1-220ENST00000556486 AP3S2P59780 193 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 DLK1P80370 383 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 UBE2V1Q13404 147 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 GSG1LQ6UXU4 331 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 BPIFCQ8NFQ6 507 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 OR11H7Q8NGC8 314 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 C7orf50Q9BRJ6 194 aaKnown RBP7□□□□□ -1.29
SCFD1-220ENST00000556486 ATG101Q9BSB4 218 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 RSG1Q9BU20 258 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 MAGT1Q9H0U3 335 aa7□□□□□ -1.29
SCFD1-220ENST00000556486 SRRM2Q9UQ35 2752 aaKnown RBP7□□□□□ -1.29
SCFD1-220ENST00000556486 PLAC8L1A1L4L8 177 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 IAPPP10997 89 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 PLP1P60201 277 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 TMEM144Q7Z5S9 345 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 SHANK2-AS3Q9BTD1 123 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 TMEM208Q9BTX3 173 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 TMEM147Q9BVK8 224 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 SLC25A22Q9H936 323 aa6.99□□□□□ -1.29
SCFD1-220ENST00000556486 A0A087X0K7 114 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 A0A1W2PPQ1 181 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 H3BRN7 92 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 K7EPK0 472 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 RPL7P18124 248 aaKnown RBP6.98□□□□□ -1.29
SCFD1-220ENST00000556486 ORM2P19652 201 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 UBE2MP61081 183 aaKnown RBP6.98□□□□□ -1.29
SCFD1-220ENST00000556486 SELENOTP62341 195 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 SPINK13Q1W4C9 94 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 Q5VSD8 79 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 ACOT7LQ6ZUV0 252 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 TMED4Q7Z7H5 227 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 TMEM256Q8N2U0 113 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 ZNRF2Q8NHG8 242 aa6.98□□□□□ -1.29
SCFD1-220ENST00000556486 FLG2Q5D862 2391 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-220ENST00000556486 FNDC10F2Z333 226 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 H3BMQ9 156 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 BOLA2-SMG1P6H3BVE0 249 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 M0R2Z0 102 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 WRBO00258 174 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 SFT2D2O95562 160 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 NUDT3O95989 172 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 CXCL3P19876 107 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 GATA2P23769 480 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-220ENST00000556486 PPP1R1AQ13522 171 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 TOMM5Q8N4H5 51 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 SLC25A39Q9BZJ4 359 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-220ENST00000556486 MDFICQ9P1T7 246 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 RNF24Q9Y225 148 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 STRAPQ9Y3F4 350 aaKnown RBP6.97□□□□□ -1.29
SCFD1-220ENST00000556486 V9GYH0 126 aa6.97□□□□□ -1.29
SCFD1-220ENST00000556486 PMS2P5A8MQ11 134 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 ZNF705GA8MUZ8 300 aaPredicted RBP6.96□□□□□ -1.3
SCFD1-220ENST00000556486 PRM2P04554 102 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 ATP5G1P05496 136 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 ATP5G3P48201 142 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 TAS2R60P59551 318 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 AKR1C1Q04828 323 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 SPANXN5Q5MJ07 72 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 ZNF493Q6ZR52 646 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 CYP2G1PQ6ZSU1 146 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 S100A7AQ86SG5 101 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 BAP18Q8IXM2 172 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 RNF182Q8N6D2 247 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 OR8A1Q8NGG7 326 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 MCFD2Q8NI22 146 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 KRTAP1-5Q9BYS1 174 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 MSRB1Q9NZV6 116 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 HIGD1AQ9Y241 93 aa6.96□□□□□ -1.3
SCFD1-220ENST00000556486 GAGE12JA6NER3 117 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 H3BP45 60 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 MRPS12O15235 138 aaKnown RBP6.95□□□□□ -1.3
SCFD1-220ENST00000556486 HYPMO75409 117 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 SMR3BP02814 79 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-220ENST00000556486 IL5P05113 134 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 CXCL2P19875 107 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 AZU1P20160 251 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 CCL18P55774 89 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 GAGE2BQ13066 116 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 GAGE2EQ4V326 116 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 PXDC1Q5TGL8 231 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 IGFL4Q6B9Z1 124 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 PRR27Q6MZM9 219 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 GAGE2AQ6NT46 116 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 LINC00612Q8N6U2 182 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 ZNF738Q8NE65 137 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 RNASE8Q8TDE3 154 aaKnown RBP6.95□□□□□ -1.3
SCFD1-220ENST00000556486 C16orf74Q96GX8 76 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 C18orf15Q96N68 181 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 C20orf144Q9BQM9 153 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 GAGE2DQ9UEU5 116 aa6.95□□□□□ -1.3
SCFD1-220ENST00000556486 PAIP2BQ9ULR5 123 aaKnown RBP6.95□□□□□ -1.3
SCFD1-220ENST00000556486 TIMM8BQ9Y5J9 83 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-220ENST00000556486 TRAV12-2A0A075B6T6 113 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 LINC00869P0C866 280 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 DEFB130BP0DP73 79 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 DEFB130AP0DP74 79 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 CDKN1BP46527 198 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 HAMPP81172 84 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 PSG3Q16557 428 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms