RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 FOXI2Q6ZQN5 318 aa10.38□□□□□ -0.75
VIPAS39-208ENST00000556412 MBD3L1Q8WWY6 194 aa10.38□□□□□ -0.75
VIPAS39-208ENST00000556412 SAV1Q9H4B6 383 aaPredicted RBP10.38□□□□□ -0.75
VIPAS39-208ENST00000556412 CLEC5AQ9NY25 188 aa10.38□□□□□ -0.75
VIPAS39-208ENST00000556412 RPH3ALQ9UNE2 315 aa10.38□□□□□ -0.75
VIPAS39-208ENST00000556412 LOC102724200A0A096LPH7 203 aaPredicted RBP10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 RBMY1BA6NDE4 496 aaKnown RBP10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 PGPA6NDG6 321 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 RBMY1EA6NEQ0 496 aaKnown RBP10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 RBMY1DP0C7P1 496 aaKnown RBP10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 A0A0J9YX75 114 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 PRAC2D3DTV9 90 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 TEX46H3BTG2 121 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 HLA-DRB4P13762 266 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 CSN1S1P47710 185 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 LYPD1Q8N2G4 141 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 CMTM2Q8TAZ6 248 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 OTORQ9NRC9 128 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 PRELID1Q9Y255 219 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 HLA-DRB4X5D2U9 266 aa10.37□□□□□ -0.75
VIPAS39-208ENST00000556412 A8MZ25 164 aa10.36□□□□□ -0.75
VIPAS39-208ENST00000556412 H3BMM0 161 aa10.36□□□□□ -0.75
VIPAS39-208ENST00000556412 TEX261Q6UWH6 196 aa10.36□□□□□ -0.75
VIPAS39-208ENST00000556412 OR8A1Q8NGG7 326 aa10.36□□□□□ -0.75
VIPAS39-208ENST00000556412 OR10J6PQ8NGY7 276 aa10.36□□□□□ -0.75
VIPAS39-208ENST00000556412 ASCL2Q99929 193 aa10.36□□□□□ -0.75
VIPAS39-208ENST00000556412 FBN3Q75N90 2809 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 HBE1P02100 147 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 CNN1P51911 297 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 TRPT1Q86TN4 253 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 SUN5Q8TC36 379 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 MRPL53Q96EL3 112 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 YTHDF2Q9Y5A9 579 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 IGKV2-40A0A087WW87 121 aaPredicted RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 DUSP14O95147 198 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 IGKV2D-40P01614 121 aaPredicted RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 SLC25A5P05141 298 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 SUMO1P63165 101 aaKnown RBP10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 CCL20P78556 96 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 CST9LP1Q5W188 147 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 ZNF680Q8NEM1 530 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 PPP1R14DQ9NXH3 145 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 GNG13Q9P2W3 67 aa10.35□□□□□ -0.75
VIPAS39-208ENST00000556412 GGTLC3B5MD39 225 aa10.34□□□□□ -0.75
VIPAS39-208ENST00000556412 IFNA7P01567 189 aa10.34□□□□□ -0.75
VIPAS39-208ENST00000556412 APOC4P55056 127 aa10.34□□□□□ -0.75
VIPAS39-208ENST00000556412 FXYD7P58549 80 aa10.34□□□□□ -0.75
VIPAS39-208ENST00000556412 GNG5P63218 68 aa10.34□□□□□ -0.75
VIPAS39-208ENST00000556412 BLOC1S1P78537 153 aa10.34□□□□□ -0.75
VIPAS39-208ENST00000556412 RXFP4Q8TDU9 374 aa10.34□□□□□ -0.75
VIPAS39-208ENST00000556412 A0A1W2PRE2 83 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 FAM74A7A6NL05 159 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 PAGE4O60829 102 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 ERCC8Q13216 396 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 PCNPQ8WW12 178 aaKnown RBP10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 TRAV1-1A0A0B4J248 108 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 CA1P00915 261 aaPredicted RBP10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 NUTF2P61970 127 aaKnown RBP10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 HAGHQ16775 308 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 LINC00322Q6ZN03 302 aaPredicted RBP10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 SBSPONQ8IVN8 264 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 CSTL1Q9H114 145 aa10.33□□□□□ -0.76
VIPAS39-208ENST00000556412 SORL1Q92673 2214 aa10.32□□□□□ -0.76
VIPAS39-208ENST00000556412 DIRC3C9JPN6 131 aa10.32□□□□□ -0.76
VIPAS39-208ENST00000556412 ATP5G3P48201 142 aa10.32□□□□□ -0.76
VIPAS39-208ENST00000556412 PPT1P50897 306 aa10.32□□□□□ -0.76
VIPAS39-208ENST00000556412 GOLT1AQ6ZVE7 132 aa10.32□□□□□ -0.76
VIPAS39-208ENST00000556412 C5orf17Q8NAS9 161 aa10.32□□□□□ -0.76
VIPAS39-208ENST00000556412 SLC35B3Q9H1N7 401 aa10.32□□□□□ -0.76
VIPAS39-208ENST00000556412 TMEM78Q5T7P6 136 aa10.31□□□□□ -0.76
VIPAS39-208ENST00000556412 VGLL1Q99990 258 aa10.31□□□□□ -0.76
VIPAS39-208ENST00000556412 KIR2DL5BA0A0G2JN68 375 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 KIR2DL5BA0A0G2JPC4 375 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 NPIPB6E9PJ23 425 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 IFNA1P01562 189 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 SPINK13Q1W4C9 94 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 MORN3Q6PF18 240 aaPredicted RBP10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 KIR2DL5AQ8N109 375 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 KIR2DL5BQ8NHK3 375 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 B9D2Q9BPU9 175 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 NKX6-2Q9C056 277 aaPredicted RBP10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 MANBALQ9NQG1 85 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 XCL2Q9UBD3 114 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 EPDR1Q9UM22 224 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 J3KRW8 73 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 M0R2Z0 102 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 TCRAP04437 139 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 DEFB135Q30KP9 77 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 Q8TAT8 98 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 SGK494Q96LW2 274 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 AGPAT4-IT1Q9H0P7 198 aa10.3□□□□□ -0.76
VIPAS39-208ENST00000556412 C11orf94C9JXX5 98 aa10.29□□□□□ -0.76
VIPAS39-208ENST00000556412 K7EQM0 130 aa10.29□□□□□ -0.76
VIPAS39-208ENST00000556412 AMTNQ6UX39 209 aa10.29□□□□□ -0.76
VIPAS39-208ENST00000556412 RETNQ9HD89 108 aa10.29□□□□□ -0.76
VIPAS39-208ENST00000556412 ARL2-SNX15V9GYD0 113 aa10.29□□□□□ -0.76
VIPAS39-208ENST00000556412 DNAH3Q8TD57 4116 aa10.29□□□□□ -0.76
VIPAS39-208ENST00000556412 TRAV8-1A0A0A6YYK1 113 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 CT45A10P0DMU9 189 aa10.28□□□□□ -0.76
VIPAS39-208ENST00000556412 ATG101Q9BSB4 218 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms