RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ZFP36P26651 326 aaKnown RBP10.5□□□□□ -0.73
SHMT2-222ENST00000555774 UBE2E1P51965 193 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 ZNF738Q8NE65 137 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 ZNF502Q8TBZ5 544 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 PRELID3AQ96N28 172 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 PMCHL2Q9BQD1 86 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 PPP1R14DQ9NXH3 145 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 POLEQ07864 2286 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 D6R8Y8 96 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 IGHV3-23P01764 117 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 DPF1Q92782 380 aa10.5□□□□□ -0.73
SHMT2-222ENST00000555774 IGHV2-70DA0A0C4DH43 119 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 IGLC6P0CF74 106 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 FER1L6-AS1Q8NA97 138 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 TMEM213A2RRL7 107 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 RBAKDNA6NC62 111 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 C12orf54Q6X4T0 127 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 SIGLEC8Q9NYZ4 499 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 RAXQ9Y2V3 346 aa10.49□□□□□ -0.73
SHMT2-222ENST00000555774 TMSB15BA0A087X1C1 80 aa10.48□□□□□ -0.73
SHMT2-222ENST00000555774 IGHG4P01861 327 aa10.48□□□□□ -0.73
SHMT2-222ENST00000555774 IFI27P40305 119 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-222ENST00000555774 MRPL51Q4U2R6 128 aaKnown RBP10.48□□□□□ -0.73
SHMT2-222ENST00000555774 AMN1Q8IY45 258 aa10.48□□□□□ -0.73
SHMT2-222ENST00000555774 SLC50A1Q9BRV3 221 aa10.48□□□□□ -0.73
SHMT2-222ENST00000555774 NPFFR1Q9GZQ6 430 aa10.48□□□□□ -0.73
SHMT2-222ENST00000555774 ANKHD1Q8IWZ3 2542 aaKnown RBP10.48□□□□□ -0.73
SHMT2-222ENST00000555774 UNQ5815/PRO19632Q6UWF5 114 aa10.47□□□□□ -0.73
SHMT2-222ENST00000555774 CNFNQ9BYD5 112 aa10.47□□□□□ -0.73
SHMT2-222ENST00000555774 ZFAND3Q9H8U3 227 aa10.47□□□□□ -0.73
SHMT2-222ENST00000555774 GOSR1O95249 250 aa10.47□□□□□ -0.73
SHMT2-222ENST00000555774 C15orf32Q32M92 178 aa10.47□□□□□ -0.73
SHMT2-222ENST00000555774 VGLL1Q99990 258 aa10.47□□□□□ -0.73
SHMT2-222ENST00000555774 A0A096LNJ9 63 aa10.46□□□□□ -0.73
SHMT2-222ENST00000555774 FABP5P3A8MUU1 101 aa10.46□□□□□ -0.73
SHMT2-222ENST00000555774 GPR183P32249 361 aa10.46□□□□□ -0.73
SHMT2-222ENST00000555774 HIST1H1AQ02539 215 aaPredicted RBP10.46□□□□□ -0.73
SHMT2-222ENST00000555774 LGALS9BQ3B8N2 356 aa10.46□□□□□ -0.73
SHMT2-222ENST00000555774 LGALS9CQ6DKI2 356 aa10.46□□□□□ -0.73
SHMT2-222ENST00000555774 BUB3O43684 328 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 HBDP02042 147 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 PPBPP02775 128 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 COX8AP10176 69 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 ZNF80P51504 273 aaPredicted RBP10.46□□□□□ -0.74
SHMT2-222ENST00000555774 EFNA4P52798 201 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 RHOGP84095 191 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 UBE2V1Q13404 147 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 Q8TAT8 98 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 MRPL53Q96EL3 112 aaKnown RBP10.46□□□□□ -0.74
SHMT2-222ENST00000555774 AJUBAQ96IF1 538 aa10.46□□□□□ -0.74
SHMT2-222ENST00000555774 H0Y8G0 127 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 PRB4P10163 310 aaPredicted RBP10.45□□□□□ -0.74
SHMT2-222ENST00000555774 TWIST1Q15672 202 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 LINC01559Q495D7 138 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 MPV17L2Q567V2 206 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 BVES-AS1Q5T3Y7 98 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 OR1N2Q8NGR9 330 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 ATP6V0BQ99437 205 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 MUC6Q6W4X9 2439 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 ATP6V0E1O15342 81 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 TCF21O43680 179 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 CKS2P33552 79 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 PAX8Q06710 450 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 ECSCRQ19T08 205 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 EEF1AKMT3Q96AZ1 226 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 PIEZO2Q9H5I5 2752 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 ATMQ13315 3056 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 ADGRG4Q8IZF6 3080 aa10.45□□□□□ -0.74
SHMT2-222ENST00000555774 PTTG1IPP53801 180 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 PSMG3-AS1Q96PY0 264 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 PTPRQQ9UMZ3 2332 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 TIMM8BQ9Y5J9 83 aaPredicted RBP10.44□□□□□ -0.74
SHMT2-222ENST00000555774 TRBV7-1A0A0A6YYK4 115 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 LOC389332A0A1B0GUA5 103 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 LINC01546A6NGU7 62 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 NUDT3O95989 172 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 CLEC3BP05452 202 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 HLA-DMBP28068 263 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 HIF1ANQ9NWT6 349 aa10.44□□□□□ -0.74
SHMT2-222ENST00000555774 A0A1W2PPR1 153 aa10.43□□□□□ -0.74
SHMT2-222ENST00000555774 NCR2O95944 276 aa10.43□□□□□ -0.74
SHMT2-222ENST00000555774 SAA4P35542 130 aa10.43□□□□□ -0.74
SHMT2-222ENST00000555774 LOXL1Q08397 574 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-222ENST00000555774 FAM106AQ4KMX7 169 aa10.43□□□□□ -0.74
SHMT2-222ENST00000555774 DEFB125Q8N687 156 aa10.43□□□□□ -0.74
SHMT2-222ENST00000555774 MCRIP2Q9BUT9 160 aaKnown RBP10.43□□□□□ -0.74
SHMT2-222ENST00000555774 CENPVL3A0A0U1RRI6 287 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 CCL25O15444 150 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 NPYP01303 97 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 ORM1P02763 201 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 IGFL4Q6B9Z1 124 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 ZNF575Q86XF7 245 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 OR8A1Q8NGG7 326 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 CCDC140Q96MF4 163 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 TLN1Q9Y490 2541 aaKnown RBP10.42□□□□□ -0.74
SHMT2-222ENST00000555774 ABCA1O95477 2261 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 CLPSL1A2RUU4 121 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 LMO4P61968 165 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 PSMG4Q5JS54 123 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms