RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 STX3Q13277 289 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 PMVKQ15126 192 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 C6orf183Q5T699 404 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 BCL2L15Q5TBC7 163 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 FAM104BQ5XKR9 115 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 TMEM136Q6ZRR5 245 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 SSX6Q7RTT6 188 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 SCXQ7RTU7 201 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 DAZ4Q86SG3 579 aaKnown RBP0.77□□□□□ -2.29
PRPF39-208ENST00000554785 LINC00304Q8N9R0 145 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 OR51A2Q8NGJ7 313 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 OR51T1Q8NGJ9 327 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 OTOSQ8NHW6 89 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 RASSF5Q8WWW0 418 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 ADAT3Q96EY9 351 aaPredicted RBP0.77□□□□□ -2.29
PRPF39-208ENST00000554785 DERL3Q96Q80 235 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 METTL26Q96S19 204 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 CGREF1Q99674 301 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 APOL4Q9BPW4 351 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 SHANK2-AS3Q9BTD1 123 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 TSSK6Q9BXA6 273 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 C6orf62Q9GZU0 229 aaPredicted RBP0.77□□□□□ -2.29
PRPF39-208ENST00000554785 DPH3P1Q9H4G8 78 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 SND1-IT1Q9HBX3 110 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 DAZ1Q9NQZ3 744 aaKnown RBP0.77□□□□□ -2.29
PRPF39-208ENST00000554785 RASL12Q9NYN1 266 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 PRO0628Q9UI54 55 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 AP3M1Q9Y2T2 418 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 FAM32AQ9Y421 112 aaKnown RBP0.77□□□□□ -2.29
PRPF39-208ENST00000554785 NUBP2Q9Y5Y2 271 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 V9GYY9 64 aa0.77□□□□□ -2.29
PRPF39-208ENST00000554785 TRAV8-7A0A075B6U6 113 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 IGKV2-24A0A0C4DH68 120 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 A0A0G2JND7 137 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 PNMA8CA0A1B0GUJ8 204 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 FUOMA2VDF0 154 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 OR4C46A6NHA9 309 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TRPC5OSA6NMA1 111 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 RIIAD1A6NNX1 92 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 E7EUB6 86 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 C15orf65H3BRN8 121 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 SLC22A1O15245 554 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 GGCTO75223 188 aaKnown RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 NDUFA3O95167 84 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 CRYZL1O95825 349 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 HRASP01112 189 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 KRASP01116 189 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 MIFP14174 115 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 CRHBPP24387 322 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 KDELR2P33947 212 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 UBE2KP61086 200 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 NAA20P61599 178 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 SELENOWP63302 87 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 USF2Q15853 346 aaPredicted RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TAL2Q16559 108 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 Q3ZCU0 254 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 AKIRIN2Q53H80 203 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 PSMG4Q5JS54 123 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 SPIN3Q5JUX0 258 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 LINC01590Q5TEZ4 76 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 NXNL2Q5VZ03 156 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 RASSF6Q6ZTQ3 369 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 FAM231DQ6ZW35 169 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TRMT10CQ7L0Y3 403 aaKnown RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 ZNF439Q8NDP4 499 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 OR4B1Q8NGF8 309 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TNFAIP8L1Q8WVP5 186 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 SMIM8Q96KF7 97 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 GPX7Q96SL4 187 aaPredicted RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 NIPSNAP1Q9BPW8 284 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 C7orf50Q9BRJ6 194 aaKnown RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 DCUN1D5Q9BTE7 237 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TMEM208Q9BTX3 173 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 THTPAQ9BU02 230 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 MAP1LC3CQ9BXW4 147 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 CST11Q9H112 138 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 BANF2Q9H503 90 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TAF9BQ9HBM6 251 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 VCX3AQ9NNX9 186 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TMEM14BQ9NUH8 114 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 GNG8Q9UK08 70 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 OR52A1Q9UKL2 312 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 ARL2BPQ9Y2Y0 163 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TRAV12-2A0A075B6T6 113 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 A0A087WTM6 91 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 FXYD1O00168 92 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 MRASO14807 208 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 TCAPO15273 167 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 ATP8B1O43520 1251 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 MRPS14O60783 128 aaKnown RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 IGLV3-1P01715 115 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 APOC1P02654 83 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 CSN2P05814 226 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 IGKV4-1P06312 121 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 OR5AC1P0C628 307 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 ZNF705DP0CH99 300 aaPredicted RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 ZNF705BP0CI00 300 aaPredicted RBP0.76□□□□□ -2.29
PRPF39-208ENST00000554785 SPART-AS1P0CW21 52 aa0.76□□□□□ -2.29
PRPF39-208ENST00000554785 MT1HL1P0DM35 61 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms