RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SLC50A1Q9BRV3 221 aa8.3□□□□□ -1.08
CCDC88C-208ENST00000554165 TMEM14CQ9P0S9 112 aa8.3□□□□□ -1.08
CCDC88C-208ENST00000554165 GOLT1BQ9Y3E0 138 aa8.3□□□□□ -1.08
CCDC88C-208ENST00000554165 JTBO76095 146 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 IFNA5P01569 189 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 OR10J4P0C629 311 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 HIST1H1EP10412 219 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 AZU1P20160 251 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 ERCC8Q13216 396 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 OXA1LQ15070 435 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 RGS21Q2M5E4 152 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 ZNF503Q96F45 646 aa8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 KLK5Q9Y337 293 aaPredicted RBP8.29□□□□□ -1.08
CCDC88C-208ENST00000554165 LOC102723971A0A1B0GUV8 181 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 C17orf112F2Z3M2 114 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 J3KRW8 73 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 LY6G6CO95867 125 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 HBE1P02100 147 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 CT45A10P0DMU9 189 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 GUK1Q16774 197 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 RPP25LQ8N5L8 163 aaKnown RBP8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 SCGB1C1Q8TD33 95 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 LINC00476Q8WZB0 136 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 FXYD5Q96DB9 178 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 TMEM208Q9BTX3 173 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 PPP1R14DQ9NXH3 145 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 FUT9Q9Y231 359 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 TIMM9Q9Y5J7 89 aa8.28□□□□□ -1.08
CCDC88C-208ENST00000554165 SMIM9A6NGZ8 99 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 IGLL5B9A064 214 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 G3V3Q6 166 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 INSP01308 110 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 GIPP09681 153 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 NBEAP1P0C6P0 100 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 RAB2AP61019 212 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 FAM222AQ5U5X8 452 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 OR10J6PQ8NGY7 276 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 RNF141Q8WVD5 230 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 PHYHIPLQ96FC7 376 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 PAXXQ9BUH6 204 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 OR51M1Q9H341 326 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 KCNIP2Q9NS61 270 aa8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 YTHDF2Q9Y5A9 579 aaKnown RBP8.27□□□□□ -1.09
CCDC88C-208ENST00000554165 IGKV2-40A0A087WW87 121 aaPredicted RBP8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 FXYD6-FXYD2A0A087WZ82 144 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 NPIPB6E9PJ23 425 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 SMLR1H3BR10 107 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 HMGB3O15347 200 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 ZNF253O75346 499 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 IGKV2D-40P01614 121 aaPredicted RBP8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 AMBPP02760 352 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 HTN1P15515 57 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 ICAM4Q14773 271 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 RRN3P1Q2M238 152 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 FAM122CQ6P4D5 195 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 HSD17B11Q8NBQ5 300 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 C2CD4CQ8TF44 421 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 AQP10Q96PS8 301 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 MRPL32Q9BYC8 188 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 AGPAT4-IT1Q9H0P7 198 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 DKK2Q9UBU2 259 aa8.26□□□□□ -1.09
CCDC88C-208ENST00000554165 TRAV10A0A0B4J240 114 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 PLAC8L1A1L4L8 177 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 RNF222A6NCQ9 220 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 OR7C2O60412 319 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 SPART-AS1P0CW21 52 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 CDKN1BP46527 198 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 GFI1BQ5VTD9 330 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 OR2T35Q8NGX2 323 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 LINC01587Q99440 93 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 VGLL1Q99990 258 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 APLNQ9ULZ1 77 aa8.25□□□□□ -1.09
CCDC88C-208ENST00000554165 VPS13DQ5THJ4 4388 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 DEFB131BA0A096LNP1 70 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 TMEM189A5PLL7 270 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 C11orf94C9JXX5 98 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 HTN3P15516 51 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 RANP62826 216 aaKnown RBP8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 UBE2L3P68036 154 aaKnown RBP8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 PDE6HQ13956 83 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 Q6ZQT7 251 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 MRPL53Q96EL3 112 aaKnown RBP8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 SH3BGRL3Q9H299 93 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 TNFSF18Q9UNG2 199 aa8.24□□□□□ -1.09
CCDC88C-208ENST00000554165 TRAV12-3A0A0B4J271 114 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 M6PRP20645 277 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 ATP6V0CP27449 155 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 CD300CQ08708 224 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 ACOT6Q3I5F7 207 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 RPL7L1Q6DKI1 246 aaKnown RBP8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 OR10G4Q8NGN3 311 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 OR10G9Q8NGN4 311 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 OR10G7Q8NGN6 311 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 NIPSNAP3BQ9BS92 247 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 Q9H3A6 140 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 AAMDCQ9H7C9 122 aa8.23□□□□□ -1.09
CCDC88C-208ENST00000554165 IGHV4-4A0A075B6R2 117 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 DEFB130BP0DP73 79 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 DEFB130AP0DP74 79 aa8.22□□□□□ -1.09
CCDC88C-208ENST00000554165 TSPOP30536 169 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms