RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TRAV1-1A0A0B4J248 108 aa9.04□□□□□ -0.96
SHMT2-209ENST00000553949 RBMY1BA6NDE4 496 aaKnown RBP9.04□□□□□ -0.96
SHMT2-209ENST00000553949 RBMY1EA6NEQ0 496 aaKnown RBP9.04□□□□□ -0.96
SHMT2-209ENST00000553949 ZNF705FA8MVS1 300 aaPredicted RBP9.04□□□□□ -0.96
SHMT2-209ENST00000553949 M0R3E3 92 aa9.04□□□□□ -0.96
SHMT2-209ENST00000553949 RBMY1DP0C7P1 496 aaKnown RBP9.04□□□□□ -0.96
SHMT2-209ENST00000553949 PRB4P10163 310 aaPredicted RBP9.04□□□□□ -0.96
SHMT2-209ENST00000553949 GDF5OSQ5U4N7 250 aa9.04□□□□□ -0.96
SHMT2-209ENST00000553949 EBLN2Q6P2I7 272 aa9.04□□□□□ -0.96
SHMT2-209ENST00000553949 STHQ8IWL8 128 aa9.04□□□□□ -0.96
SHMT2-209ENST00000553949 ZNF680Q8NEM1 530 aa9.04□□□□□ -0.96
SHMT2-209ENST00000553949 A0A0J9YX75 114 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 A0A1W2PRE2 83 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 PGPA6NDG6 321 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 PRAC2D3DTV9 90 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 H3BMM0 161 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 TEX46H3BTG2 121 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 HBE1P02100 147 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 FRMD6-AS1P0C7T7 363 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 HLA-DRB4P13762 266 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 RPL35AP18077 110 aaKnown RBP9.03□□□□□ -0.96
SHMT2-209ENST00000553949 UBE2G2P60604 165 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 LINC00322Q6ZN03 302 aaPredicted RBP9.03□□□□□ -0.96
SHMT2-209ENST00000553949 TRPT1Q86TN4 253 aaKnown RBP9.03□□□□□ -0.96
SHMT2-209ENST00000553949 YTHDF2Q9Y5A9 579 aaKnown RBP9.03□□□□□ -0.96
SHMT2-209ENST00000553949 HLA-DRB4X5D2U9 266 aa9.03□□□□□ -0.96
SHMT2-209ENST00000553949 LOC102724200A0A096LPH7 203 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-209ENST00000553949 FAM74A7A6NL05 159 aa9.02□□□□□ -0.97
SHMT2-209ENST00000553949 IFNA7P01567 189 aa9.02□□□□□ -0.97
SHMT2-209ENST00000553949 ZNF705DP0CH99 300 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-209ENST00000553949 ZNF705BP0CI00 300 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-209ENST00000553949 CSN1S1P47710 185 aa9.02□□□□□ -0.97
SHMT2-209ENST00000553949 CNN1P51911 297 aaKnown RBP9.02□□□□□ -0.97
SHMT2-209ENST00000553949 BLOC1S1P78537 153 aa9.02□□□□□ -0.97
SHMT2-209ENST00000553949 CCL20P78556 96 aa9.02□□□□□ -0.97
SHMT2-209ENST00000553949 OR8A1Q8NGG7 326 aa9.02□□□□□ -0.97
SHMT2-209ENST00000553949 RXFP4Q8TDU9 374 aa9.02□□□□□ -0.97
SHMT2-209ENST00000553949 GGTLC3B5MD39 225 aa9.01□□□□□ -0.97
SHMT2-209ENST00000553949 DUSP14O95147 198 aaKnown RBP9.01□□□□□ -0.97
SHMT2-209ENST00000553949 PPT1P50897 306 aa9.01□□□□□ -0.97
SHMT2-209ENST00000553949 SUMO1P63165 101 aaKnown RBP9.01□□□□□ -0.97
SHMT2-209ENST00000553949 PRKDCP78527 4128 aaKnown RBP9.01□□□□□ -0.97
SHMT2-209ENST00000553949 HIST1H1AQ02539 215 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-209ENST00000553949 OR4B1Q8NGF8 309 aa9.01□□□□□ -0.97
SHMT2-209ENST00000553949 OR10J6PQ8NGY7 276 aa9.01□□□□□ -0.97
SHMT2-209ENST00000553949 CMTM2Q8TAZ6 248 aa9.01□□□□□ -0.97
SHMT2-209ENST00000553949 DNAH9Q9NYC9 4486 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 DIRC3C9JPN6 131 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 PAGE4O60829 102 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 IGKV3-20P01619 116 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 SLC25A5P05141 298 aaKnown RBP9□□□□□ -0.97
SHMT2-209ENST00000553949 ARL6IP6Q8N6S5 226 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 C5orf17Q8NAS9 161 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 CLUHP3Q96NS8 147 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 NKX6-2Q9C056 277 aaPredicted RBP9□□□□□ -0.97
SHMT2-209ENST00000553949 GNG13Q9P2W3 67 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 ARL2-SNX15V9GYD0 113 aa9□□□□□ -0.97
SHMT2-209ENST00000553949 IGKV2-40A0A087WW87 121 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-209ENST00000553949 KIR2DL5BA0A0G2JN68 375 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 KIR2DL5BA0A0G2JPC4 375 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 A8MTW9 85 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 IGKV2D-40P01614 121 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-209ENST00000553949 APOC4P55056 127 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 GNG5P63218 68 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 PMS2P11Q13670 270 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 HAGHQ16775 308 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 CST9LP1Q5W188 147 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 MORN3Q6PF18 240 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-209ENST00000553949 KIR2DL5AQ8N109 375 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 KIR2DL5BQ8NHK3 375 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 LYPD6BQ8NI32 183 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 CSTL1Q9H114 145 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 MANBALQ9NQG1 85 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 RPH3ALQ9UNE2 315 aa8.99□□□□□ -0.97
SHMT2-209ENST00000553949 NPIPB6E9PJ23 425 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 TCRAP04437 139 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 ATP5G3P48201 142 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 ERCC8Q13216 396 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 AMTNQ6UX39 209 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 C9orf47Q6ZRZ4 202 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 CCDC28AQ8IWP9 274 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 PCNPQ8WW12 178 aaKnown RBP8.98□□□□□ -0.97
SHMT2-209ENST00000553949 VGLL1Q99990 258 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 AGPAT4-IT1Q9H0P7 198 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 EPDR1Q9UM22 224 aa8.98□□□□□ -0.97
SHMT2-209ENST00000553949 RBAKDNA6NC62 111 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 CA1P00915 261 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-209ENST00000553949 IFNA1P01562 189 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 GIG44P09565 113 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-209ENST00000553949 CT45A10P0DMU9 189 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 FXYD7P58549 80 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 NUTF2P61970 127 aaKnown RBP8.97□□□□□ -0.97
SHMT2-209ENST00000553949 IFITM2Q01629 132 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 GOLT1AQ6ZVE7 132 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 SBSPONQ8IVN8 264 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 ASCL2Q99929 193 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 B9D2Q9BPU9 175 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 TCEAL7Q9BRU2 100 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 ATG101Q9BSB4 218 aa8.97□□□□□ -0.97
SHMT2-209ENST00000553949 SLC35B3Q9H1N7 401 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms