RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 DKK2Q9UBU2 259 aa13.76□□□□□ -0.21
PTCH1-227ENST00000553256 APLNQ9ULZ1 77 aa13.76□□□□□ -0.21
PTCH1-227ENST00000553256 GOLT1BQ9Y3E0 138 aa13.76□□□□□ -0.21
PTCH1-227ENST00000553256 TMEM189A5PLL7 270 aa13.75□□□□□ -0.21
PTCH1-227ENST00000553256 PDE6HQ13956 83 aa13.75□□□□□ -0.21
PTCH1-227ENST00000553256 KIR3DS1Q14943 382 aa13.75□□□□□ -0.21
PTCH1-227ENST00000553256 OXA1LQ15070 435 aa13.75□□□□□ -0.21
PTCH1-227ENST00000553256 C2CD4CQ8TF44 421 aa13.75□□□□□ -0.21
PTCH1-227ENST00000553256 MRPL53Q96EL3 112 aaKnown RBP13.75□□□□□ -0.21
PTCH1-227ENST00000553256 TRAV12-2A0A075B6T6 113 aa13.74□□□□□ -0.21
PTCH1-227ENST00000553256 IGHV3OR16-12A0A075B7B8 117 aa13.74□□□□□ -0.21
PTCH1-227ENST00000553256 M0R3E3 92 aa13.74□□□□□ -0.21
PTCH1-227ENST00000553256 ZNF767PQ75MW2 155 aa13.74□□□□□ -0.21
PTCH1-227ENST00000553256 FXYD5Q96DB9 178 aa13.74□□□□□ -0.21
PTCH1-227ENST00000553256 DNAH2Q9P225 4427 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 TRAV10A0A0B4J240 114 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 NPIPB6E9PJ23 425 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 G3V3Q6 166 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 INSP01308 110 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 TSPOP30536 169 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 LGALS9CQ6DKI2 356 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 FAM19A4Q96LR4 140 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 MRPL32Q9BYC8 188 aaKnown RBP13.73□□□□□ -0.21
PTCH1-227ENST00000553256 SMIM3Q9BZL3 60 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 MED28Q9H204 178 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 KCNIP2Q9NS61 270 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 FUT9Q9Y231 359 aa13.73□□□□□ -0.21
PTCH1-227ENST00000553256 LOC102723971A0A1B0GUV8 181 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 HBE1P02100 147 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 CT45A10P0DMU9 189 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 AZU1P20160 251 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 CDKN1BP46527 198 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 TCTAP57738 103 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 FAM222AQ5U5X8 452 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 AQP10Q96PS8 301 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 ODF3Q96PU9 254 aa13.72□□□□□ -0.21
PTCH1-227ENST00000553256 SPART-AS1P0CW21 52 aa13.71□□□□□ -0.21
PTCH1-227ENST00000553256 RRN3P1Q2M238 152 aa13.71□□□□□ -0.21
PTCH1-227ENST00000553256 RPP25LQ8N5L8 163 aaKnown RBP13.71□□□□□ -0.21
PTCH1-227ENST00000553256 PLA2G2EQ9NZK7 142 aa13.71□□□□□ -0.21
PTCH1-227ENST00000553256 YTHDF2Q9Y5A9 579 aaKnown RBP13.71□□□□□ -0.21
PTCH1-227ENST00000553256 ZNF705GA8MUZ8 300 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-227ENST00000553256 C17orf112F2Z3M2 114 aa13.7□□□□□ -0.22
PTCH1-227ENST00000553256 GIPP09681 153 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-227ENST00000553256 RHOBP62745 196 aa13.7□□□□□ -0.22
PTCH1-227ENST00000553256 EXOC3-AS1Q8N2X6 119 aa13.7□□□□□ -0.22
PTCH1-227ENST00000553256 ASB13Q8WXK3 278 aa13.7□□□□□ -0.22
PTCH1-227ENST00000553256 OR51M1Q9H341 326 aa13.7□□□□□ -0.22
PTCH1-227ENST00000553256 LY6G6CO95867 125 aa13.69□□□□□ -0.22
PTCH1-227ENST00000553256 NBEAP1P0C6P0 100 aa13.69□□□□□ -0.22
PTCH1-227ENST00000553256 EMP1P54849 157 aa13.69□□□□□ -0.22
PTCH1-227ENST00000553256 RGS21Q2M5E4 152 aa13.69□□□□□ -0.22
PTCH1-227ENST00000553256 FFAR4Q5NUL3 377 aa13.69□□□□□ -0.22
PTCH1-227ENST00000553256 GFI1BQ5VTD9 330 aa13.69□□□□□ -0.22
PTCH1-227ENST00000553256 PRELID1Q9Y255 219 aa13.69□□□□□ -0.22
PTCH1-227ENST00000553256 DEFB131BA0A096LNP1 70 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 RNF222A6NCQ9 220 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 IGLL5B9A064 214 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 IFNA5P01569 189 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 TMEM256Q8N2U0 113 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 OR10J6PQ8NGY7 276 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 RNF141Q8WVD5 230 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 PHYHIPLQ96FC7 376 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 C20orf144Q9BQM9 153 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 PAXXQ9BUH6 204 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 AGPAT4-IT1Q9H0P7 198 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 TIMM9Q9Y5J7 89 aa13.68□□□□□ -0.22
PTCH1-227ENST00000553256 IGHV4-4A0A075B6R2 117 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 TEX48A0A1B0GUV7 120 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 TAS2R60P59551 318 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 C9orf47Q6ZRZ4 202 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 RNASE8Q8TDE3 154 aaKnown RBP13.67□□□□□ -0.22
PTCH1-227ENST00000553256 BLNKQ8WV28 456 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 NIPSNAP3BQ9BS92 247 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 DNAH17Q9UFH2 4485 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 FAT2Q9NYQ8 4349 aa13.67□□□□□ -0.22
PTCH1-227ENST00000553256 KLLNB2CW77 178 aa13.66□□□□□ -0.22
PTCH1-227ENST00000553256 EIF3GO75821 320 aaKnown RBP eCLIP13.66□□□□□ -0.22
PTCH1-227ENST00000553256 OR10J4P0C629 311 aa13.66□□□□□ -0.22
PTCH1-227ENST00000553256 ERCC8Q13216 396 aa13.66□□□□□ -0.22
PTCH1-227ENST00000553256 OR2G3Q8NGZ4 309 aa13.66□□□□□ -0.22
PTCH1-227ENST00000553256 SCGB1C1Q8TD33 95 aa13.66□□□□□ -0.22
PTCH1-227ENST00000553256 TMEM208Q9BTX3 173 aa13.66□□□□□ -0.22
PTCH1-227ENST00000553256 CRISP2P16562 243 aa13.65□□□□□ -0.22
PTCH1-227ENST00000553256 ICAM4Q14773 271 aa13.65□□□□□ -0.22
PTCH1-227ENST00000553256 TNFSF18Q9UNG2 199 aa13.65□□□□□ -0.22
PTCH1-227ENST00000553256 LYRM9A8MSI8 78 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 H7BYZ3 331 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 ZNF324O75467 553 aaPredicted RBP13.64□□□□□ -0.23
PTCH1-227ENST00000553256 M6PRP20645 277 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 RAB2AP61019 212 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 LINC00612Q8N6U2 182 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 LINC00477Q96M19 166 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 LINC01587Q99440 93 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 VGLL1Q99990 258 aa13.64□□□□□ -0.23
PTCH1-227ENST00000553256 LYPD1Q8N2G4 141 aa13.63□□□□□ -0.23
PTCH1-227ENST00000553256 ZFAND2AQ8N6M9 145 aa13.63□□□□□ -0.23
PTCH1-227ENST00000553256 PSMG3Q9BT73 122 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-227ENST00000553256 PPP1R14DQ9NXH3 145 aa13.63□□□□□ -0.23
PTCH1-227ENST00000553256 IGKV2-40A0A087WW87 121 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms