RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TRAV12-3A0A0B4J271 114 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 PRAC2D3DTV9 90 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 PITX3O75364 302 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 SNRPCP09234 159 aaKnown RBP7.07□□□□□ -1.28
VPS29-208ENST00000550267 LYPD5Q6UWN5 251 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 CYP2G1PQ6ZSU1 146 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 LINC00467Q9BRT7 94 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 GSN-AS1Q9NRJ2 163 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 MSRB1Q9NZV6 116 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 FAM30AQ9NZY2 134 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 LY96Q9Y6Y9 160 aa7.07□□□□□ -1.28
VPS29-208ENST00000550267 TRGV1A0A0A0MS02 117 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 PMS2P5A8MQ11 134 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 HYPMO75409 117 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 ZNF324O75467 553 aaPredicted RBP7.06□□□□□ -1.28
VPS29-208ENST00000550267 IGHV3-53P01767 116 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 IL5P05113 134 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 OR5G3P0C626 314 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 OR51S1Q8NGJ8 323 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 ZNF331Q9NQX6 463 aaPredicted RBP7.06□□□□□ -1.28
VPS29-208ENST00000550267 FUT9Q9Y231 359 aa7.06□□□□□ -1.28
VPS29-208ENST00000550267 LINC00854A0A1B0GVQ3 168 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 H3BP45 60 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 WRBO00258 174 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 MRPS12O15235 138 aaKnown RBP7.05□□□□□ -1.28
VPS29-208ENST00000550267 LINC00869P0C866 280 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 AKAIN1P0CW23 69 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 CT45A10P0DMU9 189 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 ANXA7P20073 488 aaKnown RBP7.05□□□□□ -1.28
VPS29-208ENST00000550267 SPANXN5Q5MJ07 72 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 ACOT7LQ6ZUV0 252 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 WFDC10BQ8IUB3 73 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 C11orf72Q8NBR9 251 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 DEFB104AQ8WTQ1 72 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 C15orf40Q8WUR7 153 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 PRRT1Q99946 306 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 PYGO2Q9BRQ0 406 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 FUNDC2Q9BWH2 189 aa7.05□□□□□ -1.28
VPS29-208ENST00000550267 LRP1Q07954 4544 aaKnown RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 SMCO3A2RU48 225 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 LRCOL1A6NCL2 159 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 H3BTX0 84 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 ANXA3P12429 323 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 CXCL2P19875 107 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 PLP1P60201 277 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 RPP30P78346 268 aaKnown RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 SRPXP78539 464 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 SSBP1Q04837 148 aaKnown RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 LCN15Q6UWW0 184 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 PATE2Q6UY27 113 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 CLVS1Q8IUQ0 354 aaPredicted RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 ZBTB8BQ8NAP8 495 aaPredicted RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 ZNF431Q8TF32 576 aaPredicted RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 NTN5Q8WTR8 489 aaPredicted RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 AP3S1Q92572 193 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 CIB3Q96Q77 187 aaPredicted RBP7.04□□□□□ -1.28
VPS29-208ENST00000550267 SLC50A1Q9BRV3 221 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 MIXL1Q9H2W2 232 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 PRO0255Q9UI72 69 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 KLF12Q9Y4X4 402 aa7.04□□□□□ -1.28
VPS29-208ENST00000550267 SLC17A3O00476 420 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 SYNGR2O43760 224 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 PRAF2O60831 178 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 MED6O75586 246 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 ATP6V1G2O95670 118 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 EVI2AP22794 236 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 LEPP41159 167 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 CRYBA4P53673 196 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 MRPS10P82664 201 aaKnown RBP7.03□□□□□ -1.28
VPS29-208ENST00000550267 NEGR1Q7Z3B1 354 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 ZNF680Q8NEM1 530 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 ARL6Q9H0F7 186 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 ARV1Q9H2C2 271 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 VCX3AQ9NNX9 186 aa7.03□□□□□ -1.28
VPS29-208ENST00000550267 FAT3Q8TDW7 4589 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 DUXBA0A1W2PPF3 345 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 PSCAO43653 123 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 SPINK4O60575 86 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 SELENOTP62341 195 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 MRPL23Q16540 153 aaKnown RBP7.02□□□□□ -1.29
VPS29-208ENST00000550267 SMIM4Q8WVI0 70 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 ST6GAL2Q96JF0 529 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 SCGB3A2Q96PL1 93 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 ODF3Q96PU9 254 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 MRPL16Q9NX20 251 aaKnown RBP7.02□□□□□ -1.29
VPS29-208ENST00000550267 HHLA3Q9XRX5 114 aa7.02□□□□□ -1.29
VPS29-208ENST00000550267 STRAPQ9Y3F4 350 aaKnown RBP7.02□□□□□ -1.29
VPS29-208ENST00000550267 A0A087WXM4 84 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 ANKRD20A5PA0PJZ0 165 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 C7orf71A4D174 169 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 K7EP13 123 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 CRYGDP07320 174 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 SLC25A6P12236 298 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 TCL1AP56279 114 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 S100A7AQ86SG5 101 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 EIF4E3Q8N5X7 224 aaKnown RBP7.01□□□□□ -1.29
VPS29-208ENST00000550267 Q8N814 137 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 NAA50Q9GZZ1 169 aaKnown RBP7.01□□□□□ -1.29
VPS29-208ENST00000550267 CDIP1Q9H305 208 aa7.01□□□□□ -1.29
VPS29-208ENST00000550267 SCP2D1Q9UJQ7 156 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms