RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PKHD1P08F94 4074 aa11.55□□□□□ -0.56
VPS29-207ENST00000549970 HERC2O95714 4834 aa11.54□□□□□ -0.56
VPS29-207ENST00000549970 RPL29P47914 159 aaKnown RBP11.54□□□□□ -0.56
VPS29-207ENST00000549970 KIR3DS1Q14943 382 aa11.54□□□□□ -0.56
VPS29-207ENST00000549970 OR10J6PQ8NGY7 276 aa11.54□□□□□ -0.56
VPS29-207ENST00000549970 SAT2Q96F10 170 aaPredicted RBP11.54□□□□□ -0.56
VPS29-207ENST00000549970 IGLV2-18A0A075B6J9 118 aa11.53□□□□□ -0.56
VPS29-207ENST00000549970 SIX6O95475 246 aa11.53□□□□□ -0.56
VPS29-207ENST00000549970 C16orf74Q96GX8 76 aa11.53□□□□□ -0.56
VPS29-207ENST00000549970 J3KRW8 73 aa11.52□□□□□ -0.57
VPS29-207ENST00000549970 UPK1BO75841 260 aa11.52□□□□□ -0.57
VPS29-207ENST00000549970 GUK1Q16774 197 aa11.52□□□□□ -0.57
VPS29-207ENST00000549970 ATP6V1FQ16864 119 aa11.52□□□□□ -0.57
VPS29-207ENST00000549970 LINC00336Q6ZUF6 198 aa11.52□□□□□ -0.57
VPS29-207ENST00000549970 ZNF586Q9NXT0 402 aa11.52□□□□□ -0.57
VPS29-207ENST00000549970 F5H768 121 aa11.51□□□□□ -0.57
VPS29-207ENST00000549970 H7BYZ3 331 aa11.51□□□□□ -0.57
VPS29-207ENST00000549970 LRRC37A5PQ49AS3 106 aa11.51□□□□□ -0.57
VPS29-207ENST00000549970 GFI1BQ5VTD9 330 aa11.51□□□□□ -0.57
VPS29-207ENST00000549970 C15orf53Q8NAA6 179 aa11.51□□□□□ -0.57
VPS29-207ENST00000549970 TIMM8BQ9Y5J9 83 aaPredicted RBP11.51□□□□□ -0.57
VPS29-207ENST00000549970 DYNC1H1Q14204 4646 aaKnown RBP11.51□□□□□ -0.57
VPS29-207ENST00000549970 NACAE9PAV3 2078 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 ATP5G1P05496 136 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 ATP5G3P48201 142 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 IFITM3Q01628 133 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 NHLH2Q02577 135 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 LGALS9BQ3B8N2 356 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 RNF212Q495C1 297 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 OR5C1Q8NGR4 320 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 THAP6Q8TBB0 222 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 RNASE8Q8TDE3 154 aaKnown RBP11.5□□□□□ -0.57
VPS29-207ENST00000549970 TMEM263Q8WUH6 116 aaKnown RBP11.5□□□□□ -0.57
VPS29-207ENST00000549970 CHAC2Q8WUX2 184 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 C20orf144Q9BQM9 153 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 NPCDR1Q9BY65 106 aa11.5□□□□□ -0.57
VPS29-207ENST00000549970 NOP10Q9NPE3 64 aaKnown RBP11.5□□□□□ -0.57
VPS29-207ENST00000549970 TRBV19A0A075B6N1 114 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 M0R3E3 92 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 RTL8CO15255 209 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 MPDU1O75352 247 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 RLN2P04090 185 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 CT45A10P0DMU9 189 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 PYYP10082 97 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 GCSAMLQ5JQS6 135 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 ZNF493Q6ZR52 646 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 NMES1Q9C002 83 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 OR5AC2Q9NZP5 309 aa11.49□□□□□ -0.57
VPS29-207ENST00000549970 CBY3A6NI87 242 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 PRSS29PA6NIE9 313 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 E5RGE8 158 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 NPIPB6E9PJ23 425 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 ZNF253O75346 499 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 NUDT3O95989 172 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 LEPP41159 167 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 CLINT1Q14677 625 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 CCDC28AQ8IWP9 274 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 BLNKQ8WV28 456 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 ATG101Q9BSB4 218 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 SLC25A31Q9H0C2 315 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 TMEM14CQ9P0S9 112 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 TIMM9Q9Y5J7 89 aa11.48□□□□□ -0.57
VPS29-207ENST00000549970 PKD1P98161 4303 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 TRAV12-3A0A0B4J271 114 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 A6NHS1 94 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 INMT-MINDY4F8WBC2 141 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 H0YIZ8 118 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 PRAF2O60831 178 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 NDUFB4O95168 129 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 HIST1H1EP10412 219 aaKnown RBP11.47□□□□□ -0.57
VPS29-207ENST00000549970 ERCC8Q13216 396 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 Q6ZR54 194 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 MRPL53Q96EL3 112 aaKnown RBP11.47□□□□□ -0.57
VPS29-207ENST00000549970 ODF3Q96PU9 254 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 PTTG2Q9NZH5 202 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 DNAH11Q96DT5 4516 aa11.47□□□□□ -0.57
VPS29-207ENST00000549970 KIAA1109Q2LD37 5005 aa11.46□□□□□ -0.57
VPS29-207ENST00000549970 A0A1B0GVY2 172 aa11.46□□□□□ -0.57
VPS29-207ENST00000549970 PDE6HQ13956 83 aa11.46□□□□□ -0.57
VPS29-207ENST00000549970 MIR17HGQ75NE6 70 aa11.46□□□□□ -0.57
VPS29-207ENST00000549970 EXOC3-AS1Q8N2X6 119 aa11.46□□□□□ -0.57
VPS29-207ENST00000549970 SLC25A2Q9BXI2 301 aa11.46□□□□□ -0.57
VPS29-207ENST00000549970 SNURFLB1AK76 121 aa11.45□□□□□ -0.58
VPS29-207ENST00000549970 CYCSP99999 105 aaKnown RBP11.45□□□□□ -0.58
VPS29-207ENST00000549970 PRELID1Q9Y255 219 aa11.45□□□□□ -0.58
VPS29-207ENST00000549970 H2BFSP57053 126 aa11.44□□□□□ -0.58
VPS29-207ENST00000549970 RNF141Q8WVD5 230 aa11.44□□□□□ -0.58
VPS29-207ENST00000549970 PPP1R1CQ8WVI7 109 aa11.44□□□□□ -0.58
VPS29-207ENST00000549970 FAM167A-AS1Q96KT0 104 aa11.44□□□□□ -0.58
VPS29-207ENST00000549970 PYGO2Q9BRQ0 406 aa11.44□□□□□ -0.58
VPS29-207ENST00000549970 MARVELD1Q9BSK0 173 aa11.44□□□□□ -0.58
VPS29-207ENST00000549970 WDR61Q9GZS3 305 aaKnown RBP11.44□□□□□ -0.58
VPS29-207ENST00000549970 AAMDCQ9H7C9 122 aa11.44□□□□□ -0.58
VPS29-207ENST00000549970 GAGE12BA1L429 117 aa11.43□□□□□ -0.58
VPS29-207ENST00000549970 C7orf71A4D174 169 aa11.43□□□□□ -0.58
VPS29-207ENST00000549970 GAGE7O76087 117 aa11.43□□□□□ -0.58
VPS29-207ENST00000549970 SLC25A5P05141 298 aaKnown RBP11.43□□□□□ -0.58
VPS29-207ENST00000549970 GAGE12FP0CL80 117 aa11.43□□□□□ -0.58
VPS29-207ENST00000549970 GAGE12GP0CL81 117 aa11.43□□□□□ -0.58
VPS29-207ENST00000549970 GAGE12IP0CL82 117 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms