RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PSG1P11464 419 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 BRD3OSQ6XYD6 125 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 PPDPFLQ8WWR9 84 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 DEPPQ9NTK1 212 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 VPREB3Q9UKI3 123 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 TMEM89A2RUT3 159 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 A8MWP6 167 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 IGHV3-11P01762 117 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 ELANEP08246 267 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 COX8AP10176 69 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 HERV-K104P63124 156 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 UBE2E2Q96LR5 201 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 CDK2AP2O75956 126 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 PYYP10082 97 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 SELLP14151 372 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 EVI2AP22794 236 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 NTF4P34130 210 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 KLK15Q9H2R5 256 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 LTAP01374 205 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 C3orf79P0CE67 100 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 FAM104BQ5XKR9 115 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 C2orf82Q6UX34 121 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 DAZ1Q9NQZ3 744 aaKnown RBP6.3□□□□□ -1.4
VPS13D-211ENST00000543710 RPL35AP18077 110 aaKnown RBP6.3□□□□□ -1.4
VPS13D-211ENST00000543710 SLAQ13239 276 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 KIR3DS1Q14943 382 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 GUSBP1Q15486 140 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 FAM19A2Q8N3H0 131 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 EDA2RQ9HAV5 297 aa6.3□□□□□ -1.4
VPS13D-211ENST00000543710 SH2D6Q7Z4S9 175 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 HERVK_113P63121 156 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 TMEM256Q8N2U0 113 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 NCOR1O75376 2440 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 CEND1Q8N111 149 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 KAAG1Q9UBP8 84 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 CACNA1EQ15878 2313 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 CACNA1HO95180 2353 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 PINLYPA6NC86 204 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 ZNF134P52741 427 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 SMIM20Q8N5G0 67 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 TM2D2Q9BX73 214 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 CSTL1Q9H114 145 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 UNC13CQ8NB66 2214 aa6.29□□□□□ -1.4
VPS13D-211ENST00000543710 TRBV19A0A075B6N1 114 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 IGKV1D-8A0A087WSZ0 117 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 TRAV5A0A0B4J249 113 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 TNFRSF6BO95407 300 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 IGHV2-5P01817 119 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 HILS1P60008 231 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 RPP25LQ8N5L8 163 aaKnown RBP6.28□□□□□ -1.4
VPS13D-211ENST00000543710 SOCS3O14543 225 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 ZFP36P26651 326 aaKnown RBP6.28□□□□□ -1.4
VPS13D-211ENST00000543710 PTPRQQ9UMZ3 2332 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 SCN2AQ99250 2005 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 BRWD1Q9NSI6 2320 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 IGHV2-70DA0A0C4DH43 119 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 NCR2O95944 276 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 IGLV1-44P01699 117 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 IGHV3-23P01764 117 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 RBMY1FQ15415 496 aaKnown RBP6.28□□□□□ -1.4
VPS13D-211ENST00000543710 ZNF48Q96MX3 618 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-211ENST00000543710 ZNF319Q9P2F9 582 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 IGKV1D-17A0A075B6S4 117 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 LYNX1G3V0Z9 82 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 EFNA2O43921 213 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 LYNX1P0DP58 116 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 V9GYV3 84 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 C15orf32Q32M92 178 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 ZNF493Q6ZR52 646 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 ATP6V0E2Q8NHE4 81 aa6.28□□□□□ -1.4
VPS13D-211ENST00000543710 POLR3KQ9Y2Y1 108 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-211ENST00000543710 HLA-DMBP28068 263 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 COA6Q5JTJ3 125 aaKnown RBP6.27□□□□□ -1.41
VPS13D-211ENST00000543710 DNAJC13O75165 2243 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 FOXL2P58012 376 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 IGKV2-40A0A087WW87 121 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-211ENST00000543710 C5orf63A6NC05 138 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 IGKV2D-40P01614 121 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-211ENST00000543710 SCRT1Q9BWW7 348 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 F5H768 121 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 ADCYAP1P18509 176 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 NDUFA11Q86Y39 141 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 NPBQ8NG41 125 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 RNF138Q8WVD3 245 aa6.27□□□□□ -1.41
VPS13D-211ENST00000543710 VPREB1P12018 145 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 IFITM1P13164 125 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 LINC00158P58513 81 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 TRAV12-1A0A0B4J245 112 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 E7EQL1 145 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 C10orf105Q8TEF2 133 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 H3BTX0 84 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 CRLF1O75462 422 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 ATP5G1P05496 136 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 C18orf32Q8TCD1 76 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 ZNF837Q96EG3 531 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-211ENST00000543710 HS3ST6Q96QI5 342 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 MYLKQ15746 1914 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 TRBV25-1A0A075B6N4 114 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 RNASE1P07998 156 aaKnown RBP6.26□□□□□ -1.41
VPS13D-211ENST00000543710 HOXD3P31249 432 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms