RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ZNF738Q8NE65 137 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 ZNF680Q8NEM1 530 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 Q9H3A6 140 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 SRD5A3Q9H8P0 318 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 PRELID1Q9Y255 219 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 TRAV1-1A0A0B4J248 108 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 KNCNA6PVL3 124 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 ZNF705FA8MVS1 300 aaPredicted RBP8.59□□□□□ -1.03
YBX3-213ENST00000542641 IGHV4-30-4P0DP06 118 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 DEFB1P60022 68 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 BLOC1S1P78537 153 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 ACTL10Q5JWF8 245 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 EBLN2Q6P2I7 272 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 RPUSD4Q96CM3 377 aaKnown RBP8.59□□□□□ -1.03
YBX3-213ENST00000542641 CITED4Q96RK1 184 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 OTORQ9NRC9 128 aa8.59□□□□□ -1.03
YBX3-213ENST00000542641 A0A1W2PRE2 83 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 PGPA6NDG6 321 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 F6UB75 175 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 M0R3E3 92 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 PRB4P10163 310 aaPredicted RBP8.58□□□□□ -1.04
YBX3-213ENST00000542641 CSN1S1P47710 185 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 UBE2G2P60604 165 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 CCL20P78556 96 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 FOXI2Q6ZQN5 318 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 STHQ8IWL8 128 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 CMTM2Q8TAZ6 248 aa8.58□□□□□ -1.04
YBX3-213ENST00000542641 MRPL53Q96EL3 112 aaKnown RBP8.58□□□□□ -1.04
YBX3-213ENST00000542641 SAV1Q9H4B6 383 aaPredicted RBP8.58□□□□□ -1.04
YBX3-213ENST00000542641 A0A0J9YX75 114 aa8.57□□□□□ -1.04
YBX3-213ENST00000542641 A8MZ25 164 aa8.57□□□□□ -1.04
YBX3-213ENST00000542641 PRAC2D3DTV9 90 aa8.57□□□□□ -1.04
YBX3-213ENST00000542641 PPT1P50897 306 aa8.57□□□□□ -1.04
YBX3-213ENST00000542641 SUMO1P63165 101 aaKnown RBP8.57□□□□□ -1.04
YBX3-213ENST00000542641 GDF5OSQ5U4N7 250 aa8.57□□□□□ -1.04
YBX3-213ENST00000542641 MRAPQ8TCY5 172 aa8.57□□□□□ -1.04
YBX3-213ENST00000542641 RXFP4Q8TDU9 374 aa8.57□□□□□ -1.04
YBX3-213ENST00000542641 YTHDF2Q9Y5A9 579 aaKnown RBP8.57□□□□□ -1.04
YBX3-213ENST00000542641 RBMY1BA6NDE4 496 aaKnown RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 RBMY1EA6NEQ0 496 aaKnown RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 FAM74A7A6NL05 159 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 H3BMM0 161 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 PAGE4O60829 102 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 IGKV3-20P01619 116 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 SLC25A5P05141 298 aaKnown RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 RBMY1DP0C7P1 496 aaKnown RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 ZNF705DP0CH99 300 aaPredicted RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 ZNF705BP0CI00 300 aaPredicted RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 HLA-DRB4P13762 266 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 RPL35AP18077 110 aaKnown RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 HIST1H1AQ02539 215 aaPredicted RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 CST9LP1Q5W188 147 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 OR4B1Q8NGF8 309 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 OR8A1Q8NGG7 326 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 OR10J6PQ8NGY7 276 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 NKX6-2Q9C056 277 aaPredicted RBP8.56□□□□□ -1.04
YBX3-213ENST00000542641 GNG13Q9P2W3 67 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 HLA-DRB4X5D2U9 266 aa8.56□□□□□ -1.04
YBX3-213ENST00000542641 LOC102724200A0A096LPH7 203 aaPredicted RBP8.55□□□□□ -1.04
YBX3-213ENST00000542641 GGTLC3B5MD39 225 aa8.55□□□□□ -1.04
YBX3-213ENST00000542641 DUSP14O95147 198 aaKnown RBP8.55□□□□□ -1.04
YBX3-213ENST00000542641 FRMD6-AS1P0C7T7 363 aa8.55□□□□□ -1.04
YBX3-213ENST00000542641 CNN1P51911 297 aaKnown RBP8.55□□□□□ -1.04
YBX3-213ENST00000542641 TRPT1Q86TN4 253 aaKnown RBP8.55□□□□□ -1.04
YBX3-213ENST00000542641 C5orf17Q8NAS9 161 aa8.55□□□□□ -1.04
YBX3-213ENST00000542641 PCNPQ8WW12 178 aaKnown RBP8.55□□□□□ -1.04
YBX3-213ENST00000542641 MANBALQ9NQG1 85 aa8.55□□□□□ -1.04
YBX3-213ENST00000542641 RPH3ALQ9UNE2 315 aa8.55□□□□□ -1.04
YBX3-213ENST00000542641 ARL2-SNX15V9GYD0 113 aa8.55□□□□□ -1.04
YBX3-213ENST00000542641 IGKV2-40A0A087WW87 121 aaPredicted RBP8.54□□□□□ -1.04
YBX3-213ENST00000542641 DIRC3C9JPN6 131 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 GHRHP01286 108 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 IFNA1P01562 189 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 IGKV2D-40P01614 121 aaPredicted RBP8.54□□□□□ -1.04
YBX3-213ENST00000542641 GNG5P63218 68 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 LINC00322Q6ZN03 302 aaPredicted RBP8.54□□□□□ -1.04
YBX3-213ENST00000542641 ZNF767PQ75MW2 155 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 ARL6IP6Q8N6S5 226 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 LYPD6BQ8NI32 183 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 PPP1R14DQ9NXH3 145 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 EPDR1Q9UM22 224 aa8.54□□□□□ -1.04
YBX3-213ENST00000542641 NPIPB6E9PJ23 425 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 ATP5G3P48201 142 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 APOC4P55056 127 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 RAB14P61106 215 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 NUTF2P61970 127 aaKnown RBP8.53□□□□□ -1.04
YBX3-213ENST00000542641 IFITM2Q01629 132 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 PMS2P11Q13670 270 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 HAGHQ16775 308 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 GOLT1AQ6ZVE7 132 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 CLUHP3Q96NS8 147 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 CSTL1Q9H114 145 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 MEGF8Q7Z7M0 2845 aa8.53□□□□□ -1.04
YBX3-213ENST00000542641 KIR2DL5BA0A0G2JN68 375 aa8.52□□□□□ -1.05
YBX3-213ENST00000542641 KIR2DL5BA0A0G2JPC4 375 aa8.52□□□□□ -1.05
YBX3-213ENST00000542641 RBAKDNA6NC62 111 aa8.52□□□□□ -1.05
YBX3-213ENST00000542641 C11orf94C9JXX5 98 aa8.52□□□□□ -1.05
YBX3-213ENST00000542641 K7EQM0 130 aa8.52□□□□□ -1.05
YBX3-213ENST00000542641 TCRAP04437 139 aa8.52□□□□□ -1.05
YBX3-213ENST00000542641 NMBP08949 121 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms