RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 LINC00052Q96N35 136 aa6.96□□□□□ -1.3
DDX55-208ENST00000541259 RARRES2Q99969 163 aa6.96□□□□□ -1.3
DDX55-208ENST00000541259 TRAV2A0A0B4J234 112 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 A0A1W2PRE2 83 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 OR4C46A6NHA9 309 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 GGTLC3B5MD39 225 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 ISLRO14498 428 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 ZNF253O75346 499 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 SUMO1P63165 101 aaKnown RBP6.95□□□□□ -1.3
DDX55-208ENST00000541259 PSG9Q00887 426 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 PSG3Q16557 428 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 ODF3L2Q3SX64 289 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 PSMG4Q5JS54 123 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 CST9LP1Q5W188 147 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 SLC50A1Q9BRV3 221 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 OTORQ9NRC9 128 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 NBEAL1Q6ZS30 2694 aa6.95□□□□□ -1.3
DDX55-208ENST00000541259 LOC102723971A0A1B0GUV8 181 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 F6UB75 175 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 ZNF705DP0CH99 300 aaPredicted RBP6.94□□□□□ -1.3
DDX55-208ENST00000541259 ZNF705BP0CI00 300 aaPredicted RBP6.94□□□□□ -1.3
DDX55-208ENST00000541259 ID1P41134 155 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 PPT1P50897 306 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 DEFB131AP59861 70 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 GNG5P63218 68 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 SRSF3P84103 164 aaKnown RBP6.94□□□□□ -1.3
DDX55-208ENST00000541259 EGFEM1PQ0D2K5 195 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 PMS2P11Q13670 270 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 APRG1Q8IVJ8 170 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 CCDC28AQ8IWP9 274 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 LYPD1Q8N2G4 141 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 PRR25Q96S07 402 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 GPR61Q9BZJ8 451 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 WFDC10AQ9H1F0 79 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 MAP6D1Q9H9H5 199 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 MANBALQ9NQG1 85 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 C19orf73Q9NVV2 129 aa6.94□□□□□ -1.3
DDX55-208ENST00000541259 RBFOX3A6NFN3 312 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 IFNA1P01562 189 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 SLC25A5P05141 298 aaKnown RBP6.93□□□□□ -1.3
DDX55-208ENST00000541259 BCL2P10415 239 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 CD81P60033 236 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 SNRPD3P62318 126 aaKnown RBP6.93□□□□□ -1.3
DDX55-208ENST00000541259 TOR2AQ5JU69 321 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 GDF5OSQ5U4N7 250 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 ZNF738Q8NE65 137 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 RXFP4Q8TDU9 374 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 RPUSD4Q96CM3 377 aaKnown RBP6.93□□□□□ -1.3
DDX55-208ENST00000541259 FAM210AQ96ND0 272 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 AAMDCQ9H7C9 122 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 RPH3ALQ9UNE2 315 aa6.93□□□□□ -1.3
DDX55-208ENST00000541259 IGKV2-40A0A087WW87 121 aaPredicted RBP6.92□□□□□ -1.3
DDX55-208ENST00000541259 KNCNA6PVL3 124 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 DIRC3C9JPN6 131 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 C9JQL5 133 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 C11orf94C9JXX5 98 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 IGKV2D-40P01614 121 aaPredicted RBP6.92□□□□□ -1.3
DDX55-208ENST00000541259 PRB2P02812 416 aaPredicted RBP6.92□□□□□ -1.3
DDX55-208ENST00000541259 ERCC8Q13216 396 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 ZNF506Q5JVG8 444 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 SAMD13Q5VXD3 122 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 Q8N1Y9 231 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 DEFB125Q8N687 156 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 EIF5A2Q9GZV4 153 aaKnown RBP6.92□□□□□ -1.3
DDX55-208ENST00000541259 VAX2Q9UIW0 290 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 EPDR1Q9UM22 224 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 PRELID1Q9Y255 219 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 ARL2-SNX15V9GYD0 113 aa6.92□□□□□ -1.3
DDX55-208ENST00000541259 OR11H12B2RN74 326 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 TCRAP04437 139 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 MEF2BQ02080 365 aaPredicted RBP6.91□□□□□ -1.3
DDX55-208ENST00000541259 GOLT1AQ6ZVE7 132 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 C5orf17Q8NAS9 161 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 CMTM2Q8TAZ6 248 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 MRPL53Q96EL3 112 aaKnown RBP6.91□□□□□ -1.3
DDX55-208ENST00000541259 SGK494Q96LW2 274 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 LINC00479Q96M42 142 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 ASCL2Q99929 193 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 VGLL1Q99990 258 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 NKX6-2Q9C056 277 aaPredicted RBP6.91□□□□□ -1.3
DDX55-208ENST00000541259 AP5S1Q9NUS5 200 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 CLEC5AQ9NY25 188 aa6.91□□□□□ -1.3
DDX55-208ENST00000541259 TRAV34A0A0B4J273 112 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 A0A0J9YX75 114 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 LINC00862A6NCI5 91 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 PEX7O00628 323 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 CSN1S1P47710 185 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 ACTL10Q5JWF8 245 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 KPRPQ5T749 579 aaPredicted RBP6.9□□□□□ -1.3
DDX55-208ENST00000541259 GTSCR1Q86UQ5 136 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 COMMD7Q86VX2 200 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 OR8A1Q8NGG7 326 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 AGPAT4-IT1Q9H0P7 198 aa6.9□□□□□ -1.3
DDX55-208ENST00000541259 SAV1Q9H4B6 383 aaPredicted RBP6.9□□□□□ -1.3
DDX55-208ENST00000541259 TRAV8-1A0A0A6YYK1 113 aa6.89□□□□□ -1.31
DDX55-208ENST00000541259 RBMY1BA6NDE4 496 aaKnown RBP6.89□□□□□ -1.31
DDX55-208ENST00000541259 RBMY1EA6NEQ0 496 aaKnown RBP6.89□□□□□ -1.31
DDX55-208ENST00000541259 H3BMM0 161 aa6.89□□□□□ -1.31
DDX55-208ENST00000541259 IGKV3-20P01619 116 aa6.89□□□□□ -1.31
DDX55-208ENST00000541259 SRP19P09132 144 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms