RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TMEM242Q9NWH2 141 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 MRPL16Q9NX20 251 aaKnown RBP11.25□□□□□ -0.61
USP3-204ENST00000540797 PRR31Q5SQ13 230 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 C8orf31Q8N9H6 132 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 CHCHD1Q96BP2 118 aaKnown RBP11.25□□□□□ -0.61
USP3-204ENST00000540797 Q8NA96 180 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 A0A087WWL8 130 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 LHBP01229 141 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 FOXL1Q12952 345 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 OR5A1Q8NGJ0 315 aa11.25□□□□□ -0.61
USP3-204ENST00000540797 LOC102724200A0A096LPH7 203 aaPredicted RBP11.24□□□□□ -0.61
USP3-204ENST00000540797 PSCAO43653 123 aa11.24□□□□□ -0.61
USP3-204ENST00000540797 MRPL27Q9P0M9 148 aaKnown RBP11.24□□□□□ -0.61
USP3-204ENST00000540797 VCYO14598 125 aa11.24□□□□□ -0.61
USP3-204ENST00000540797 IFI27L1Q96BM0 104 aa11.24□□□□□ -0.61
USP3-204ENST00000540797 OR11H6Q8NGC7 330 aa11.24□□□□□ -0.61
USP3-204ENST00000540797 LINC00479Q96M42 142 aa11.24□□□□□ -0.61
USP3-204ENST00000540797 PRORYQ9H606 182 aa11.24□□□□□ -0.61
USP3-204ENST00000540797 C8orf86Q6ZUL3 223 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 NUP35Q8NFH5 326 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 CUL9Q8IWT3 2517 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 IGHV4-38-2P0DP08 117 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 H3BUA1 57 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 APOMO95445 188 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 APOC4P55056 127 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 DAD1P61803 113 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 TSSC4Q9Y5U2 329 aaPredicted RBP11.23□□□□□ -0.61
USP3-204ENST00000540797 ARMS2P0C7Q2 107 aa11.23□□□□□ -0.61
USP3-204ENST00000540797 LSM4Q9Y4Z0 139 aaKnown RBP11.23□□□□□ -0.61
USP3-204ENST00000540797 TRBV19A0A075B6N1 114 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 PAX9P55771 341 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 RASL11AQ6T310 242 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 Q8NFD4 153 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 CKS1BP61024 79 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 CTAG1AP78358 180 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 TRBV24-1A0A075B6N3 115 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 F5H768 121 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 CSTL1Q9H114 145 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 ACACBO00763 2458 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 CENPVL3A0A0U1RRI6 287 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 WISP2O76076 250 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 TMEM75Q8N9X5 138 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 PHLDA1Q8WV24 401 aaPredicted RBP11.22□□□□□ -0.61
USP3-204ENST00000540797 NOTCH3Q9UM47 2321 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 ADAMTS9Q9P2N4 1935 aa11.22□□□□□ -0.61
USP3-204ENST00000540797 IGHV3-64A0A075B6Q5 118 aa11.21□□□□□ -0.61
USP3-204ENST00000540797 KRTAP27-1Q3LI81 207 aa11.21□□□□□ -0.61
USP3-204ENST00000540797 KLK9Q9UKQ9 250 aa11.21□□□□□ -0.61
USP3-204ENST00000540797 IGKCP01834 107 aa11.21□□□□□ -0.61
USP3-204ENST00000540797 FGF23Q9GZV9 251 aaPredicted RBP11.21□□□□□ -0.61
USP3-204ENST00000540797 MS4A6AQ9H2W1 248 aa11.21□□□□□ -0.61
USP3-204ENST00000540797 IGHV7-4-1A0A0J9YVY3 117 aa11.21□□□□□ -0.62
USP3-204ENST00000540797 KNCNA6PVL3 124 aa11.21□□□□□ -0.62
USP3-204ENST00000540797 CD300EQ496F6 205 aaPredicted RBP11.21□□□□□ -0.62
USP3-204ENST00000540797 C11orf68Q9H3H3 251 aaKnown RBP11.21□□□□□ -0.62
USP3-204ENST00000540797 CFHR3Q02985 330 aa11.21□□□□□ -0.62
USP3-204ENST00000540797 C1orf159Q96HA4 380 aa11.21□□□□□ -0.62
USP3-204ENST00000540797 DMRT1Q9Y5R6 373 aa11.21□□□□□ -0.62
USP3-204ENST00000540797 A0A0U1RRA0 63 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 H3BRN7 92 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 TEX43Q6ZNM6 134 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 SLC25A2Q9BXI2 301 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 SCGB1A1P11684 91 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 POU2AF1Q16633 256 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BKO60814 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BJP06899 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BOP23527 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BBP33778 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BDP58876 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 PLP1P60201 277 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BCP62807 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST2H2BEQ16778 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BHQ93079 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BNQ99877 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 HIST1H2BMQ99879 126 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 PFN1P07737 140 aaKnown RBP11.2□□□□□ -0.62
USP3-204ENST00000540797 FBXL19-AS1Q494R0 122 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 NOTCH2Q04721 2471 aa11.2□□□□□ -0.62
USP3-204ENST00000540797 LINC00158P58513 81 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 IGFBPL1Q8WX77 278 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 CXCL1P09341 107 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 IGLC1P0CG04 106 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 FAM90A2PQ658T7 463 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 TMEM86BQ8N661 226 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 K7ERU9 68 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 C8orf49Q96NF6 230 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 CCL24O00175 119 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 SLC25A20O43772 301 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 TMEM95Q3KNT9 176 aa11.19□□□□□ -0.62
USP3-204ENST00000540797 ARFGEF3Q5TH69 2177 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 IGHV1OR15-1A0A075B7D0 117 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 ZNF815PA8K554 130 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 CDKN1BP46527 198 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 PLXNB3Q9ULL4 1909 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 RHODO00212 210 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 LINC01559Q495D7 138 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 TRAV2A0A0B4J234 112 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 PLNP26678 52 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 MORN3Q6PF18 240 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms