RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 FDCSPQ8NFU4 85 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 THBDP07204 575 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 PSG7Q13046 419 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 DTX2Q86UW9 622 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 DPM3Q9P2X0 92 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 TCL1BO95988 128 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 E9PLD3 99 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 GTSF1Q8WW33 167 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 ZNF576Q9H609 170 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 DOCK8Q8NF50 2099 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 RICTORQ6R327 1708 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 NBR2O15453 112 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 IGFL4Q6B9Z1 124 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 BAALCQ8WXS3 180 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 RNF166Q96A37 237 aaPredicted RBP7.05□□□□□ -1.28
YBX3-208ENST00000540447 TMEM167AQ8TBQ9 72 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 FER1L4A9Z1Z3 1794 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 FAM120AOSQ5T036 256 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 DPH3Q96FX2 82 aa7.05□□□□□ -1.28
YBX3-208ENST00000540447 PDE6HQ13956 83 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 SLC25A29Q8N8R3 303 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 LINC00477Q96M19 166 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 CTRLP40313 264 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 LILRA6Q6PI73 481 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 TMEM92Q6UXU6 159 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 CSDC2Q9Y534 153 aaKnown RBP7.04□□□□□ -1.28
YBX3-208ENST00000540447 Q6ZS52 159 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 ITLN2Q8WWU7 325 aaPredicted RBP7.04□□□□□ -1.28
YBX3-208ENST00000540447 PRDM6Q9NQX0 595 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 AHDC1Q5TGY3 1603 aaPredicted RBP7.04□□□□□ -1.28
YBX3-208ENST00000540447 SRRM4A7MD48 611 aaKnown RBP7.04□□□□□ -1.28
YBX3-208ENST00000540447 TRAV25A0A0B4J276 109 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 CCL3L1P16619 93 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 LINC00205P59089 165 aa7.04□□□□□ -1.28
YBX3-208ENST00000540447 NEU4Q8WWR8 484 aaPredicted RBP7.04□□□□□ -1.28
YBX3-208ENST00000540447 SHANK2-AS3Q9BTD1 123 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 IGHV1OR15-1A0A075B7D0 117 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 C2orf70A6NJV1 201 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 TGFBR3LH3BV60 316 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 BUB3O43684 328 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 FREM3P0C091 2139 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 HOXD3P31249 432 aaPredicted RBP7.03□□□□□ -1.28
YBX3-208ENST00000540447 SEC61GP60059 68 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 PLA2G2FQ9BZM2 168 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 RALGAPA1Q6GYQ0 2036 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 ARHGEF17Q96PE2 2063 aaPredicted RBP7.03□□□□□ -1.28
YBX3-208ENST00000540447 ZFP2Q6ZN57 461 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 HEATR5AQ86XA9 2040 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 RHODO00212 210 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 LMO1P25800 156 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 PFN2P35080 140 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 XGP55808 180 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 RPL36AP83881 106 aaKnown RBP7.03□□□□□ -1.28
YBX3-208ENST00000540447 RPL36ALQ969Q0 106 aaKnown RBP7.03□□□□□ -1.28
YBX3-208ENST00000540447 VPREB3Q9UKI3 123 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 UNC13CQ8NB66 2214 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 IGHV5-10-1A0A0J9YXX1 117 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 LGALS9O00182 355 aa7.03□□□□□ -1.28
YBX3-208ENST00000540447 TRAV23DV6A0A075B6W5 121 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 I3L3M4 83 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 CCL4P13236 92 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 ABCA3Q99758 1704 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 CACNA1IQ9P0X4 2223 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 ZCCHC24Q8N2G6 241 aaKnown RBP7.02□□□□□ -1.29
YBX3-208ENST00000540447 SDHAF1A6NFY7 115 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 LY6EQ16553 131 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 KLHL30-AS1Q8NEE0 82 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 TEX49A0A1B0GTD5 131 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 C5orf63A6NC05 138 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 PRR30Q53SZ7 412 aaPredicted RBP7.02□□□□□ -1.29
YBX3-208ENST00000540447 CLEC2BQ92478 149 aa7.02□□□□□ -1.29
YBX3-208ENST00000540447 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.02□□□□□ -1.29
YBX3-208ENST00000540447 FAM19A5Q7Z5A7 132 aaPredicted RBP7.02□□□□□ -1.29
YBX3-208ENST00000540447 ZNF236Q9UL36 1845 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 TRGV4A0A0C4DH28 118 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 IGKV1-6A0A0C4DH72 117 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 C21orf140B9A014 251 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 IGKV1-39P01597 117 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 TRBV12-3P01733 135 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 IGKV1D-39P04432 117 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 C9orf139Q6ZV77 190 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 IGFBPL1Q8WX77 278 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 IGHV1OR15-9A0A0B4J2B8 117 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 PSPNO60542 156 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 C20orf204Q6ZNR8 217 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 ESPL1Q14674 2120 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 NDUFA11Q86Y39 141 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 DOT1LQ8TEK3 1739 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 CLPSL1A2RUU4 121 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 CXCL10P02778 98 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 VSIG2Q96IQ7 327 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 MED12Q93074 2177 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 ETV2O00321 342 aaPredicted RBP7.01□□□□□ -1.29
YBX3-208ENST00000540447 TIMM17BO60830 172 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 COX7CP15954 63 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 PIFOQ8TCI5 191 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 TP73-AS1Q9UF72 201 aa7.01□□□□□ -1.29
YBX3-208ENST00000540447 MYO16Q9Y6X6 1858 aa7□□□□□ -1.29
YBX3-208ENST00000540447 WISP1O95388 367 aa7□□□□□ -1.29
YBX3-208ENST00000540447 ZFP36L1Q07352 338 aaKnown RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms