RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 H0Y8G0 127 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 ATP6V1G2O95670 118 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 RAB3DO95716 219 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 RAB3BP20337 219 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 GATA2P23769 480 aaPredicted RBP4.17□□□□□ -1.74
CD44-237ENST00000534082 MYL9P24844 172 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 FGL1Q08830 312 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 LAGE3Q14657 143 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 KRTAP15-1Q3LI76 137 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 C2orf83Q53S99 150 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 DHRS11Q6UWP2 260 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 THAP8Q8NA92 274 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 TMEM170AQ8WVE7 144 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 PCNPQ8WW12 178 aaKnown RBP4.17□□□□□ -1.74
CD44-237ENST00000534082 LINC01600Q96MT4 127 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 ACOT13Q9NPJ3 140 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 HEYLQ9NQ87 328 aaPredicted RBP4.17□□□□□ -1.74
CD44-237ENST00000534082 GSN-AS1Q9NRJ2 163 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 PLCXD1Q9NUJ7 323 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 RPH3ALQ9UNE2 315 aa4.17□□□□□ -1.74
CD44-237ENST00000534082 IGKV1D-37A0A075B6S9 117 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 TRAV18A0A075B6X5 111 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 MEIS3P1A6NDR6 274 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 C9JCJ5 164 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 CIB2O75838 187 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 IGHV3-30P01768 117 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 IGHV3-33P01772 117 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 FABP1P07148 127 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 IGHV3-30-3P0DP02 117 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 IGHV3-30-5P0DP03 117 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 RFX2P48378 723 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 NKX2-5P52952 324 aaPredicted RBP4.16□□□□□ -1.74
CD44-237ENST00000534082 ZFP1Q6P2D0 407 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 HSD17B11Q8NBQ5 300 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 C11orf72Q8NBR9 251 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 OR1B1Q8NGR6 318 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 BLNKQ8WV28 456 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 BAALCQ8WXS3 180 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 VGLL1Q99990 258 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 TXNDC17Q9BRA2 123 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 PYGO2Q9BRQ0 406 aa4.16□□□□□ -1.74
CD44-237ENST00000534082 TRAV12-3A0A0B4J271 114 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 A0A0G2JRQ6 117 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 SNRPGP15A8MWD9 76 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 SPINK4O60575 86 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 PMP2P02689 132 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 GNAO1P09471 354 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 PPT1P50897 306 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 VAMP2P63027 116 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 MLLT11Q13015 90 aaPredicted RBP4.15□□□□□ -1.75
CD44-237ENST00000534082 KLF9Q13886 244 aaPredicted RBP4.15□□□□□ -1.75
CD44-237ENST00000534082 ZNF846Q147U1 533 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 CNPY1Q3B7I2 92 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 CCDC190Q86UF4 302 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 OR4D5Q8NGN0 318 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 OR5H2Q8NGV7 314 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 DTD1Q8TEA8 209 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 GPR82Q96P67 336 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 SEC22CQ9BRL7 303 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 MRPL32Q9BYC8 188 aaKnown RBP4.15□□□□□ -1.75
CD44-237ENST00000534082 AUNIPQ9H7T9 357 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 IFT46Q9NQC8 304 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 MRPL16Q9NX20 251 aaKnown RBP4.15□□□□□ -1.75
CD44-237ENST00000534082 TMEM56-RWDD3S4R434 201 aa4.15□□□□□ -1.75
CD44-237ENST00000534082 TRGV4A0A0C4DH28 118 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 A0A0D9SG52 128 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 A0A0J9YXV3 536 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 LINC00587B1AMM8 73 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 F8W036 122 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 WRBO00258 174 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 ATG12O94817 140 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 ORM1P02763 201 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 OR4E1P0C645 316 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 CXCL3P19876 107 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 BCAP31P51572 246 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 TIRAPP58753 221 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 TRIM16LQ309B1 348 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 NMSQ5H8A3 153 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 C8orf59Q8N0T1 100 aaPredicted RBP4.14□□□□□ -1.75
CD44-237ENST00000534082 Q8N976 141 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 ATP6V0E2Q8NHE4 81 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 RNASE11Q8TAA1 199 aaKnown RBP4.14□□□□□ -1.75
CD44-237ENST00000534082 RPUSD4Q96CM3 377 aaKnown RBP4.14□□□□□ -1.75
CD44-237ENST00000534082 MLST8Q9BVC4 326 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 SLC25A31Q9H0C2 315 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 S100A14Q9HCY8 104 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 SLC45A2Q9UMX9 530 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 RNF24Q9Y225 148 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 KLF12Q9Y4X4 402 aa4.14□□□□□ -1.75
CD44-237ENST00000534082 TRAV8-6A0A0B4J262 113 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 RNF222A6NCQ9 220 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 CEBPZOSA8MTT3 80 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 PTGES3LE9PB15 166 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 GABARAPH6UMI1 98 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 GABARAPO95166 117 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 SCGB1D1O95968 90 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 G0S2P27469 103 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 HRH1P35367 487 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 TCL1AP56279 114 aa4.13□□□□□ -1.75
CD44-237ENST00000534082 TAS2R46P59540 309 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms