RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 BOLA2-SMG1P6H3BVE0 249 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 M0R3E3 92 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 M6PRP20645 277 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 RHOBP62745 196 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 SPINK13Q1W4C9 94 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 INO80EQ8NBZ0 244 aaPredicted RBP9.33□□□□□ -0.92
VPS28-216ENST00000533806 C11orf45Q8TAV5 145 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 PSMG3Q9BT73 122 aaPredicted RBP9.33□□□□□ -0.92
VPS28-216ENST00000533806 PAXXQ9BUH6 204 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 PRELID1Q9Y255 219 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 OR10J4P0C629 311 aa9.32□□□□□ -0.92
VPS28-216ENST00000533806 ATP6V0CP27449 155 aa9.32□□□□□ -0.92
VPS28-216ENST00000533806 NANOS2P60321 138 aaKnown RBP9.32□□□□□ -0.92
VPS28-216ENST00000533806 ACOT6Q3I5F7 207 aaPredicted RBP9.32□□□□□ -0.92
VPS28-216ENST00000533806 RPL7L1Q6DKI1 246 aaKnown RBP9.32□□□□□ -0.92
VPS28-216ENST00000533806 CEMP1Q6PRD7 247 aaPredicted RBP9.32□□□□□ -0.92
VPS28-216ENST00000533806 EXOC3-AS1Q8N2X6 119 aa9.32□□□□□ -0.92
VPS28-216ENST00000533806 RPP25LQ8N5L8 163 aaKnown RBP9.32□□□□□ -0.92
VPS28-216ENST00000533806 HSD17B11Q8NBQ5 300 aa9.32□□□□□ -0.92
VPS28-216ENST00000533806 BLNKQ8WV28 456 aa9.32□□□□□ -0.92
VPS28-216ENST00000533806 CXorf65A6NEN9 183 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 SMLR1H3BR10 107 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 CT45A10P0DMU9 189 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 RAB2AP61019 212 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 SERF2P84101 59 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 BAP18Q8IXM2 172 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 LYPD1Q8N2G4 141 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 OR10J6PQ8NGY7 276 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 PHLDA1Q8WV24 401 aaPredicted RBP9.31□□□□□ -0.92
VPS28-216ENST00000533806 PHYHIPLQ96FC7 376 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 ODF3Q96PU9 254 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 CYTL1Q9NRR1 136 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 CELA1Q9UNI1 258 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 GOLT1BQ9Y3E0 138 aa9.31□□□□□ -0.92
VPS28-216ENST00000533806 HYDINQ4G0P3 5121 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 TRAV12-2A0A075B6T6 113 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 LCE6AA0A183 80 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 NUPR2A6NF83 97 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 OR7C2O60412 319 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 EIF3GO75821 320 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS28-216ENST00000533806 CDKN1BP46527 198 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 TAS2R45P59539 299 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 PMS2P11Q13670 270 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 ICAM4Q14773 271 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 KIR3DS1Q14943 382 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 KHDC3LQ587J8 217 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 OR11H4Q8NGC9 324 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 OR10G4Q8NGN3 311 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 OR10G9Q8NGN4 311 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 OR10G7Q8NGN6 311 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 FAM19A4Q96LR4 140 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 SH3BGRL3Q9H299 93 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 ALMS1Q8TCU4 4167 aa9.3□□□□□ -0.92
VPS28-216ENST00000533806 IGHV3OR16-12A0A075B7B8 117 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 TMEM189A5PLL7 270 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 ARPC5O15511 151 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 INSP01308 110 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 Q6ZNX1 250 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 PQLC2Q6ZP29 291 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 C9orf47Q6ZRZ4 202 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 SUN5Q8TC36 379 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 AGPAT4-IT1Q9H0P7 198 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 AAMDCQ9H7C9 122 aa9.29□□□□□ -0.92
VPS28-216ENST00000533806 BORCS7-ASMTA0A0B4J1R7 106 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 A0A1W2PPV4 95 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 PLAC8L1A1L4L8 177 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 HMSDA8MTL9 139 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 TAAR5O14804 337 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 JTBO76095 146 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 HBE1P02100 147 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 PRM2P04554 102 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 STAG3L2P0CL84 134 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 STAG3L3P0CL85 134 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 TSPOP30536 169 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 RANP62826 216 aaKnown RBP9.28□□□□□ -0.92
VPS28-216ENST00000533806 UBE2L3P68036 154 aaKnown RBP9.28□□□□□ -0.92
VPS28-216ENST00000533806 ERCC8Q13216 396 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 C12orf74Q32Q52 190 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 FAM122CQ6P4D5 195 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 TMEM256Q8N2U0 113 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 GNPNAT1Q96EK6 184 aaPredicted RBP9.28□□□□□ -0.92
VPS28-216ENST00000533806 LINC00477Q96M19 166 aa9.28□□□□□ -0.92
VPS28-216ENST00000533806 LOC102723971A0A1B0GUV8 181 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 MBP02144 154 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 AZU1P20160 251 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 ZNF345Q14585 488 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 RRN3P1Q2M238 152 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 GFI1BQ5VTD9 330 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 Q6ZTC4 211 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 KCNRGQ8N5I3 272 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 RAB24Q969Q5 203 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 ST6GAL2Q96JF0 529 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 VGLL1Q99990 258 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 C20orf144Q9BQM9 153 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 Q9H3A6 140 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 PPP1R14DQ9NXH3 145 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 DKK2Q9UBU2 259 aa9.27□□□□□ -0.93
VPS28-216ENST00000533806 IGKV2-40A0A087WW87 121 aaPredicted RBP9.26□□□□□ -0.93
VPS28-216ENST00000533806 RBAKDNA6NC62 111 aa9.26□□□□□ -0.93
VPS28-216ENST00000533806 ZNF705GA8MUZ8 300 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms