RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 C16orf74Q96GX8 76 aa10.93□□□□□ -0.66
CPSF1-211ENST00000533492 PRAC2D3DTV9 90 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 F5H768 121 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 H7BYZ3 331 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 MPDU1O75352 247 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 RNF212Q495C1 297 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 ZNF493Q6ZR52 646 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 C15orf53Q8NAA6 179 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 CHAC2Q8WUX2 184 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 C20orf144Q9BQM9 153 aa10.92□□□□□ -0.66
CPSF1-211ENST00000533492 TIMM8BQ9Y5J9 83 aaPredicted RBP10.92□□□□□ -0.66
CPSF1-211ENST00000533492 IGLV2-18A0A075B6J9 118 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 PLAC8L1A1L4L8 177 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 UPK1BO75841 260 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 SIX6O95475 246 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 ATP5G1P05496 136 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 ATP5G3P48201 142 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 LGALS9BQ3B8N2 356 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 CCDC28AQ8IWP9 274 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 PARD6GQ9BYG4 376 aaPredicted RBP10.91□□□□□ -0.66
CPSF1-211ENST00000533492 SLC25A31Q9H0C2 315 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 ZNF586Q9NXT0 402 aa10.91□□□□□ -0.66
CPSF1-211ENST00000533492 CBY3A6NI87 242 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 E5RGE8 158 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 J3KRW8 73 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 NHLH2Q02577 135 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 KIR3DS1Q14943 382 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 LRRC37A5PQ49AS3 106 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 TMEM263Q8WUH6 116 aaKnown RBP10.9□□□□□ -0.66
CPSF1-211ENST00000533492 ATG101Q9BSB4 218 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 NOP10Q9NPE3 64 aaKnown RBP10.9□□□□□ -0.66
CPSF1-211ENST00000533492 TIMM9Q9Y5J7 89 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 DNAH6Q9C0G6 4158 aa10.9□□□□□ -0.66
CPSF1-211ENST00000533492 INMT-MINDY4F8WBC2 141 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 PRAF2O60831 178 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 ZNF253O75346 499 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 HIST1H1EP10412 219 aaKnown RBP10.89□□□□□ -0.67
CPSF1-211ENST00000533492 LEPP41159 167 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 CYCSP99999 105 aaKnown RBP10.89□□□□□ -0.67
CPSF1-211ENST00000533492 GFI1BQ5VTD9 330 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 OR5C1Q8NGR4 320 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 NPCDR1Q9BY65 106 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 NMES1Q9C002 83 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 TMEM14CQ9P0S9 112 aa10.89□□□□□ -0.67
CPSF1-211ENST00000533492 TRBV19A0A075B6N1 114 aa10.88□□□□□ -0.67
CPSF1-211ENST00000533492 A6NHS1 94 aa10.88□□□□□ -0.67
CPSF1-211ENST00000533492 NUDT3O95989 172 aa10.88□□□□□ -0.67
CPSF1-211ENST00000533492 CT45A10P0DMU9 189 aa10.88□□□□□ -0.67
CPSF1-211ENST00000533492 THAP6Q8TBB0 222 aa10.88□□□□□ -0.67
CPSF1-211ENST00000533492 RNASE8Q8TDE3 154 aaKnown RBP10.88□□□□□ -0.67
CPSF1-211ENST00000533492 MRPL53Q96EL3 112 aaKnown RBP10.88□□□□□ -0.67
CPSF1-211ENST00000533492 ODF3Q96PU9 254 aa10.88□□□□□ -0.67
CPSF1-211ENST00000533492 PRELID1Q9Y255 219 aa10.88□□□□□ -0.67
CPSF1-211ENST00000533492 TRAV12-3A0A0B4J271 114 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 PRSS29PA6NIE9 313 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 NPIPB6E9PJ23 425 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 PYYP10082 97 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 CLINT1Q14677 625 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 BLNKQ8WV28 456 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 AAMDCQ9H7C9 122 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 PTTG2Q9NZH5 202 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 OR5AC2Q9NZP5 309 aa10.87□□□□□ -0.67
CPSF1-211ENST00000533492 SNURFLB1AK76 121 aa10.86□□□□□ -0.67
CPSF1-211ENST00000533492 M0R3E3 92 aa10.86□□□□□ -0.67
CPSF1-211ENST00000533492 FAM3BP58499 235 aaPredicted RBP10.86□□□□□ -0.67
CPSF1-211ENST00000533492 IFITM3Q01628 133 aa10.86□□□□□ -0.67
CPSF1-211ENST00000533492 PDE6HQ13956 83 aa10.86□□□□□ -0.67
CPSF1-211ENST00000533492 GCSAMLQ5JQS6 135 aa10.86□□□□□ -0.67
CPSF1-211ENST00000533492 SOHLH1Q5JUK2 328 aa10.86□□□□□ -0.67
CPSF1-211ENST00000533492 KCNIP2Q9NS61 270 aa10.86□□□□□ -0.67
CPSF1-211ENST00000533492 RTL8CO15255 209 aa10.85□□□□□ -0.67
CPSF1-211ENST00000533492 NDUFB4O95168 129 aa10.85□□□□□ -0.67
CPSF1-211ENST00000533492 DEFA1P59665 94 aa10.85□□□□□ -0.67
CPSF1-211ENST00000533492 DEFA3P59666 94 aa10.85□□□□□ -0.67
CPSF1-211ENST00000533492 ERCC8Q13216 396 aa10.85□□□□□ -0.67
CPSF1-211ENST00000533492 LINC00477Q96M19 166 aa10.85□□□□□ -0.67
CPSF1-211ENST00000533492 PYGO2Q9BRQ0 406 aa10.85□□□□□ -0.67
CPSF1-211ENST00000533492 C17orf112F2Z3M2 114 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 H0YIZ8 118 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 SSNA1O43805 119 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 SLC25A5P05141 298 aaKnown RBP10.84□□□□□ -0.67
CPSF1-211ENST00000533492 CCL18P55774 89 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 OR5I1Q13606 314 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 Q6ZR54 194 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 MIR17HGQ75NE6 70 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 EXOC3-AS1Q8N2X6 119 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 MARVELD1Q9BSK0 173 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 SLC25A2Q9BXI2 301 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 WDR61Q9GZS3 305 aaKnown RBP10.84□□□□□ -0.67
CPSF1-211ENST00000533492 OR51M1Q9H341 326 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 NACAE9PAV3 2078 aa10.84□□□□□ -0.67
CPSF1-211ENST00000533492 GAGE12BA1L429 117 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 C7orf71A4D174 169 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 GAGE7O76087 117 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 NBEAP1P0C6P0 100 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 GAGE12FP0CL80 117 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 GAGE12GP0CL81 117 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 GAGE12IP0CL82 117 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 ICAM4Q14773 271 aa10.83□□□□□ -0.68
CPSF1-211ENST00000533492 PPP1R1CQ8WVI7 109 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms