RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 LINC01587Q99440 93 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 MARVELD1Q9BSK0 173 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 BATF3Q9NR55 127 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 KCNIP2Q9NS61 270 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 PLA2G2EQ9NZK7 142 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 OR5AC2Q9NZP5 309 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 KMT2AQ03164 3969 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 SSNA1O43805 119 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 ZNF253O75346 499 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 PRM2P04554 102 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 PET100P0DJ07 73 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 TAS2R60P59551 318 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 NHLH2Q02577 135 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 CLINT1Q14677 625 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 SAT2Q96F10 170 aaPredicted RBP9.46□□□□□ -0.9
VPS28-211ENST00000530790 C16orf74Q96GX8 76 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 TMEM14CQ9P0S9 112 aa9.46□□□□□ -0.9
VPS28-211ENST00000530790 TRBV19A0A075B6N1 114 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 PRAC2D3DTV9 90 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 HTN1P15515 57 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 H2BFSP57053 126 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 POM121L12Q8N7R1 296 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 PPP1R1CQ8WVI7 109 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 C20orf144Q9BQM9 153 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 ZNF586Q9NXT0 402 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 VPS13DQ5THJ4 4388 aa9.45□□□□□ -0.9
VPS28-211ENST00000530790 H0YIZ8 118 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 H7BYZ3 331 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 DEFB130BP0DP73 79 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 DEFB130AP0DP74 79 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 AZU1P20160 251 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 LEPP41159 167 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 PDE6HQ13956 83 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 GCSAMLQ5JQS6 135 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 UBE2DNLQ8IWF7 75 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 MRPL53Q96EL3 112 aaKnown RBP9.44□□□□□ -0.9
VPS28-211ENST00000530790 ODF3Q96PU9 254 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 PARD6GQ9BYG4 376 aaPredicted RBP9.44□□□□□ -0.9
VPS28-211ENST00000530790 TIMM9Q9Y5J7 89 aa9.44□□□□□ -0.9
VPS28-211ENST00000530790 PLAC8L1A1L4L8 177 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 NPIPB6E9PJ23 425 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 C17orf112F2Z3M2 114 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 PYYP10082 97 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 HIST1H1EP10412 219 aaKnown RBP9.43□□□□□ -0.9
VPS28-211ENST00000530790 GFI1BQ5VTD9 330 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 TMEM88Q6PEY1 159 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 ZNF493Q6ZR52 646 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 TMEM263Q8WUH6 116 aaKnown RBP9.43□□□□□ -0.9
VPS28-211ENST00000530790 BLNKQ8WV28 456 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 WDR61Q9GZS3 305 aaKnown RBP9.43□□□□□ -0.9
VPS28-211ENST00000530790 AAMDCQ9H7C9 122 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 PRELID1Q9Y255 219 aa9.43□□□□□ -0.9
VPS28-211ENST00000530790 J3KRW8 73 aa9.42□□□□□ -0.9
VPS28-211ENST00000530790 M0R3E3 92 aa9.42□□□□□ -0.9
VPS28-211ENST00000530790 KIR3DS1Q14943 382 aa9.42□□□□□ -0.9
VPS28-211ENST00000530790 C15orf53Q8NAA6 179 aa9.42□□□□□ -0.9
VPS28-211ENST00000530790 RNASE8Q8TDE3 154 aaKnown RBP9.42□□□□□ -0.9
VPS28-211ENST00000530790 ATP5SQ99766 215 aa9.42□□□□□ -0.9
VPS28-211ENST00000530790 SLC25A2Q9BXI2 301 aa9.42□□□□□ -0.9
VPS28-211ENST00000530790 MRPL32Q9BYC8 188 aaKnown RBP9.42□□□□□ -0.9
VPS28-211ENST00000530790 TIMM8BQ9Y5J9 83 aaPredicted RBP9.42□□□□□ -0.9
VPS28-211ENST00000530790 FRAS1Q86XX4 4008 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 NDUFB4O95168 129 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 MPC2O95563 127 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 CT45A10P0DMU9 189 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 FCN2Q15485 313 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 MIR17HGQ75NE6 70 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 CCDC28AQ8IWP9 274 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 HSPB11Q9Y547 144 aa9.41□□□□□ -0.9
VPS28-211ENST00000530790 ATP5G1P05496 136 aa9.4□□□□□ -0.9
VPS28-211ENST00000530790 ATP5G3P48201 142 aa9.4□□□□□ -0.9
VPS28-211ENST00000530790 EXOC3-AS1Q8N2X6 119 aa9.4□□□□□ -0.9
VPS28-211ENST00000530790 NOP10Q9NPE3 64 aaKnown RBP9.4□□□□□ -0.9
VPS28-211ENST00000530790 MBD2Q9UBB5 411 aa9.4□□□□□ -0.9
VPS28-211ENST00000530790 DNAH6Q9C0G6 4158 aa9.4□□□□□ -0.91
VPS28-211ENST00000530790 TRAV12-3A0A0B4J271 114 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 CBY3A6NI87 242 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 F5H768 121 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 IFNA5P01569 189 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 OR10J4P0C629 311 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 RPL12P30050 165 aaKnown RBP9.39□□□□□ -0.91
VPS28-211ENST00000530790 ERCC8Q13216 396 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 SCGB1C1Q8TD33 95 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 FAM167A-AS1Q96KT0 104 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 PYGO2Q9BRQ0 406 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 PAXXQ9BUH6 204 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 SMIM3Q9BZL3 60 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 OR51M1Q9H341 326 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 FUT9Q9Y231 359 aa9.39□□□□□ -0.91
VPS28-211ENST00000530790 C7orf71A4D174 169 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 SNURFLB1AK76 121 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 M0R2N4 97 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 OR7C2O60412 319 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 SLC25A5P05141 298 aaKnown RBP9.38□□□□□ -0.91
VPS28-211ENST00000530790 NBEAP1P0C6P0 100 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 ICAM4Q14773 271 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 RNF212Q495C1 297 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 FFAR4Q5NUL3 377 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 TMEM78Q5T7P6 136 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 FAM122CQ6P4D5 195 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms