RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TMED6	Q8WW62	240 aa		15.25	■□□□□ 0.03
CD44-222	ENST00000526025	RPUSD4	Q96CM3	377 aa	Known RBP	15.25	■□□□□ 0.03
CD44-222	ENST00000526025	PHYHIPL	Q96FC7	376 aa		15.25	■□□□□ 0.03
CD44-222	ENST00000526025	SPATA25	Q9BR10	227 aa		15.25	■□□□□ 0.03
CD44-222	ENST00000526025	TMEM167B	Q9NRX6	74 aa		15.25	■□□□□ 0.03
CD44-222	ENST00000526025	HMGB3	O15347	200 aa	Known RBP	15.24	■□□□□ 0.03
CD44-222	ENST00000526025	GCHFR	P30047	84 aa		15.24	■□□□□ 0.03
CD44-222	ENST00000526025	NUTF2	P61970	127 aa	Known RBP	15.24	■□□□□ 0.03
CD44-222	ENST00000526025	SSX7	Q7RTT5	188 aa		15.24	■□□□□ 0.03
CD44-222	ENST00000526025	ASCL2	Q99929	193 aa		15.24	■□□□□ 0.03
CD44-222	ENST00000526025	PLA2G2E	Q9NZK7	142 aa		15.24	■□□□□ 0.03
CD44-222	ENST00000526025	TP53TG1	Q9Y2A0	90 aa		15.24	■□□□□ 0.03
CD44-222	ENST00000526025	COL7A1	Q02388	2944 aa		15.23	■□□□□ 0.03
CD44-222	ENST00000526025	TG	P01266	2768 aa		15.23	■□□□□ 0.03
CD44-222	ENST00000526025		F6UB75	175 aa		15.23	■□□□□ 0.03
CD44-222	ENST00000526025	EIF3G	O75821	320 aa	Known RBP eCLIP	15.23	■□□□□ 0.03
CD44-222	ENST00000526025	DEFB1	P60022	68 aa		15.23	■□□□□ 0.03
CD44-222	ENST00000526025	ZMAT4	Q9H898	229 aa		15.23	■□□□□ 0.03
CD44-222	ENST00000526025	MAP1LC3B2	A6NCE7	125 aa		15.22	■□□□□ 0.03
CD44-222	ENST00000526025	NKX2-5	P52952	324 aa	Predicted RBP	15.22	■□□□□ 0.03
CD44-222	ENST00000526025	ARL6IP6	Q8N6S5	226 aa		15.22	■□□□□ 0.03
CD44-222	ENST00000526025	MBD3L1	Q8WWY6	194 aa		15.22	■□□□□ 0.03
CD44-222	ENST00000526025	MAP1LC3B	Q9GZQ8	125 aa		15.22	■□□□□ 0.03
CD44-222	ENST00000526025		Q9H3A6	140 aa		15.22	■□□□□ 0.03
CD44-222	ENST00000526025	OTOR	Q9NRC9	128 aa		15.22	■□□□□ 0.03
CD44-222	ENST00000526025	CNN1	P51911	297 aa	Known RBP	15.21	■□□□□ 0.03
CD44-222	ENST00000526025	RAN	P62826	216 aa	Known RBP	15.21	■□□□□ 0.03
CD44-222	ENST00000526025	ICAM4	Q14773	271 aa		15.21	■□□□□ 0.03
CD44-222	ENST00000526025	EXOC3-AS1	Q8N2X6	119 aa		15.21	■□□□□ 0.03
CD44-222	ENST00000526025	C1QTNF4	Q9BXJ3	329 aa		15.21	■□□□□ 0.03
CD44-222	ENST00000526025	HUWE1	Q7Z6Z7	4374 aa	Known RBP	15.2	■□□□□ 0.02
CD44-222	ENST00000526025	ZNF705F	A8MVS1	300 aa	Predicted RBP	15.2	■□□□□ 0.02
CD44-222	ENST00000526025	CA1	P00915	261 aa	Predicted RBP	15.2	■□□□□ 0.02
CD44-222	ENST00000526025	FHIT	P49789	147 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	SULT1A2	P50226	295 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	FAM74A1	Q5RGS3	127 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	AMTN	Q6UX39	209 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	OR4B1	Q8NGF8	309 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	OR10J6P	Q8NGY7	276 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	FAM213B	Q8TBF2	198 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	RXFP4	Q8TDU9	374 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	NBEAL2	Q6ZNJ1	2754 aa		15.2	■□□□□ 0.02
CD44-222	ENST00000526025	TENM3	Q9P273	2699 aa		15.19	■□□□□ 0.02
CD44-222	ENST00000526025		M0R3E3	92 aa		15.19	■□□□□ 0.02
CD44-222	ENST00000526025	GIG44	P09565	113 aa	Predicted RBP	15.19	■□□□□ 0.02
CD44-222	ENST00000526025	CSN1S1	P47710	185 aa		15.19	■□□□□ 0.02
CD44-222	ENST00000526025	HIST1H1A	Q02539	215 aa	Predicted RBP	15.19	■□□□□ 0.02
CD44-222	ENST00000526025		A0A1W2PRE2	83 aa		15.18	■□□□□ 0.02
CD44-222	ENST00000526025	PRAC2	D3DTV9	90 aa		15.18	■□□□□ 0.02
CD44-222	ENST00000526025	AMBP	P02760	352 aa		15.18	■□□□□ 0.02
CD44-222	ENST00000526025	RNF183	Q96D59	192 aa		15.18	■□□□□ 0.02
CD44-222	ENST00000526025	ODF3	Q96PU9	254 aa		15.18	■□□□□ 0.02
CD44-222	ENST00000526025	RBAKDN	A6NC62	111 aa		15.17	■□□□□ 0.02
CD44-222	ENST00000526025	NPIPB6	E9PJ23	425 aa		15.17	■□□□□ 0.02
CD44-222	ENST00000526025	RCHY1	Q96PM5	261 aa		15.17	■□□□□ 0.02
CD44-222	ENST00000526025	ARL2-SNX15	V9GYD0	113 aa		15.17	■□□□□ 0.02
CD44-222	ENST00000526025	STAB2	Q8WWQ8	2551 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	TRAV1-1	A0A0B4J248	108 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	SPRY2	O43597	315 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	IGKV3-20	P01619	116 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	SLC25A5	P05141	298 aa	Known RBP	15.16	■□□□□ 0.02
CD44-222	ENST00000526025	H2AFB1	P0C5Y9	115 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	ZNF705D	P0CH99	300 aa	Predicted RBP	15.16	■□□□□ 0.02
CD44-222	ENST00000526025	ZNF705B	P0CI00	300 aa	Predicted RBP	15.16	■□□□□ 0.02
CD44-222	ENST00000526025	FGF8	P55075	233 aa	Predicted RBP	15.16	■□□□□ 0.02
CD44-222	ENST00000526025	DEFB135	Q30KP9	77 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	C9orf47	Q6ZRZ4	202 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	SFT2D1	Q8WV19	159 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	OVOL2	Q9BRP0	275 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	NKX6-2	Q9C056	277 aa	Predicted RBP	15.16	■□□□□ 0.02
CD44-222	ENST00000526025		U3KQK5	164 aa		15.16	■□□□□ 0.02
CD44-222	ENST00000526025	PGP	A6NDG6	321 aa		15.15	■□□□□ 0.02
CD44-222	ENST00000526025	BOLA2-SMG1P6	H3BVE0	249 aa		15.15	■□□□□ 0.02
CD44-222	ENST00000526025	IQCF2	Q8IXL9	164 aa		15.15	■□□□□ 0.02
CD44-222	ENST00000526025	CSNK1G2-AS1	Q8NCQ2	148 aa		15.15	■□□□□ 0.02
CD44-222	ENST00000526025	CMTM2	Q8TAZ6	248 aa		15.15	■□□□□ 0.02
CD44-222	ENST00000526025	LINC00477	Q96M19	166 aa		15.15	■□□□□ 0.02
CD44-222	ENST00000526025	BOLA1	Q9Y3E2	137 aa		15.15	■□□□□ 0.02
CD44-222	ENST00000526025	DIRC3	C9JPN6	131 aa		15.14	■□□□□ 0.01
CD44-222	ENST00000526025	C5orf17	Q8NAS9	161 aa		15.14	■□□□□ 0.01
CD44-222	ENST00000526025	SLC35B3	Q9H1N7	401 aa		15.14	■□□□□ 0.01
CD44-222	ENST00000526025	TMPRSS5	Q9H3S3	457 aa		15.14	■□□□□ 0.01
CD44-222	ENST00000526025	TRBV7-9	A0A0J9YWB2	115 aa		15.13	■□□□□ 0.01
CD44-222	ENST00000526025	SERTM2	A0A1B0GWG4	89 aa		15.13	■□□□□ 0.01
CD44-222	ENST00000526025	TEX46	H3BTG2	121 aa		15.13	■□□□□ 0.01
CD44-222	ENST00000526025	PPT1	P50897	306 aa		15.13	■□□□□ 0.01
CD44-222	ENST00000526025	PPP1R14D	Q9NXH3	145 aa		15.13	■□□□□ 0.01
CD44-222	ENST00000526025	FAM74A7	A6NL05	159 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	GGTLC3	B5MD39	225 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	HBE1	P02100	147 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	TSPO	P30536	169 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	IGF2BP2-AS1	Q96M15	143 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	TCEAL7	Q9BRU2	100 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	RETN	Q9HD89	108 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	XCL2	Q9UBD3	114 aa		15.12	■□□□□ 0.01
CD44-222	ENST00000526025	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	15.11	■□□□□ 0.01
CD44-222	ENST00000526025	ZNF705E	A8MWA4	302 aa	Predicted RBP	15.11	■□□□□ 0.01
CD44-222	ENST00000526025	IGKV2D-40	P01614	121 aa	Predicted RBP	15.11	■□□□□ 0.01
CD44-222	ENST00000526025	CDKN1B	P46527	198 aa		15.11	■□□□□ 0.01
CD44-222	ENST00000526025	TMEM78	Q5T7P6	136 aa		15.11	■□□□□ 0.01

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