RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CMC4P56277 68 aaPredicted RBP11.35□□□□□ -0.59
LSM1-203ENST00000520755 DEFB131AP59861 70 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 PSG9Q00887 426 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 ICAM4Q14773 271 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 PSG3Q16557 428 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 PSMG4Q5JS54 123 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 SAMD13Q5VXD3 122 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 OTORQ9NRC9 128 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 ARL2-SNX15V9GYD0 113 aa11.35□□□□□ -0.59
LSM1-203ENST00000520755 PRKDCP78527 4128 aaKnown RBP11.34□□□□□ -0.59
LSM1-203ENST00000520755 PRAC2D3DTV9 90 aa11.34□□□□□ -0.59
LSM1-203ENST00000520755 SNRPD3P62318 126 aaKnown RBP11.34□□□□□ -0.59
LSM1-203ENST00000520755 PMS2P11Q13670 270 aa11.34□□□□□ -0.59
LSM1-203ENST00000520755 CCDC28AQ8IWP9 274 aa11.34□□□□□ -0.59
LSM1-203ENST00000520755 LYPD1Q8N2G4 141 aa11.34□□□□□ -0.59
LSM1-203ENST00000520755 LINC00052Q96N35 136 aa11.34□□□□□ -0.59
LSM1-203ENST00000520755 FAM110AQ9BQ89 295 aa11.34□□□□□ -0.59
LSM1-203ENST00000520755 MANBALQ9NQG1 85 aa11.34□□□□□ -0.59
LSM1-203ENST00000520755 LOC102723971A0A1B0GUV8 181 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 PGPA6NDG6 321 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 BCL2P10415 239 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 ID1P41134 155 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 GNG5P63218 68 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 GDF5OSQ5U4N7 250 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 MRPL53Q96EL3 112 aaKnown RBP11.33□□□□□ -0.6
LSM1-203ENST00000520755 CITED4Q96RK1 184 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 AAMDCQ9H7C9 122 aa11.33□□□□□ -0.6
LSM1-203ENST00000520755 A8MZ25 164 aa11.32□□□□□ -0.6
LSM1-203ENST00000520755 F6UB75 175 aa11.32□□□□□ -0.6
LSM1-203ENST00000520755 PPT1P50897 306 aa11.32□□□□□ -0.6
LSM1-203ENST00000520755 HAGHQ16775 308 aa11.32□□□□□ -0.6
LSM1-203ENST00000520755 ZNF738Q8NE65 137 aa11.32□□□□□ -0.6
LSM1-203ENST00000520755 RBMY1BA6NDE4 496 aaKnown RBP11.31□□□□□ -0.6
LSM1-203ENST00000520755 RBMY1EA6NEQ0 496 aaKnown RBP11.31□□□□□ -0.6
LSM1-203ENST00000520755 RBMY1DP0C7P1 496 aaKnown RBP11.31□□□□□ -0.6
LSM1-203ENST00000520755 RAB14P61106 215 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 SUMO1P63165 101 aaKnown RBP11.31□□□□□ -0.6
LSM1-203ENST00000520755 CST9LP1Q5W188 147 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 C5orf17Q8NAS9 161 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 RPUSD4Q96CM3 377 aaKnown RBP11.31□□□□□ -0.6
LSM1-203ENST00000520755 FAM210AQ96ND0 272 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 ASCL2Q99929 193 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 RARRES2Q99969 163 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 CLEC5AQ9NY25 188 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 PRELID1Q9Y255 219 aa11.31□□□□□ -0.6
LSM1-203ENST00000520755 IGKV2-40A0A087WW87 121 aaPredicted RBP11.3□□□□□ -0.6
LSM1-203ENST00000520755 KNCNA6PVL3 124 aa11.3□□□□□ -0.6
LSM1-203ENST00000520755 C11orf94C9JXX5 98 aa11.3□□□□□ -0.6
LSM1-203ENST00000520755 IFNA1P01562 189 aa11.3□□□□□ -0.6
LSM1-203ENST00000520755 IGKV2D-40P01614 121 aaPredicted RBP11.3□□□□□ -0.6
LSM1-203ENST00000520755 SLC25A5P05141 298 aaKnown RBP11.3□□□□□ -0.6
LSM1-203ENST00000520755 ZNF705DP0CH99 300 aaPredicted RBP11.3□□□□□ -0.6
LSM1-203ENST00000520755 ZNF705BP0CI00 300 aaPredicted RBP11.3□□□□□ -0.6
LSM1-203ENST00000520755 TOR2AQ5JU69 321 aa11.3□□□□□ -0.6
LSM1-203ENST00000520755 ZNF506Q5JVG8 444 aa11.3□□□□□ -0.6
LSM1-203ENST00000520755 B9D2Q9BPU9 175 aa11.3□□□□□ -0.6
LSM1-203ENST00000520755 SAV1Q9H4B6 383 aaPredicted RBP11.3□□□□□ -0.6
LSM1-203ENST00000520755 RPH3ALQ9UNE2 315 aa11.3□□□□□ -0.6
LSM1-203ENST00000520755 LOC102724200A0A096LPH7 203 aaPredicted RBP11.29□□□□□ -0.6
LSM1-203ENST00000520755 A0A0J9YX75 114 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 SCO2A0A1W2PP80 73 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 RBFOX3A6NFN3 312 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 DIRC3C9JPN6 131 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 TCRAP04437 139 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 RPL35AP18077 110 aaKnown RBP11.29□□□□□ -0.6
LSM1-203ENST00000520755 MEF2BQ02080 365 aaPredicted RBP11.29□□□□□ -0.6
LSM1-203ENST00000520755 ACTL10Q5JWF8 245 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 FOXI2Q6ZQN5 318 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 OR8A1Q8NGG7 326 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 VAX2Q9UIW0 290 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 DNAH9Q9NYC9 4486 aa11.29□□□□□ -0.6
LSM1-203ENST00000520755 A8MTW9 85 aa11.28□□□□□ -0.6
LSM1-203ENST00000520755 HLA-DRB4P13762 266 aa11.28□□□□□ -0.6
LSM1-203ENST00000520755 SRSF3P84103 164 aaKnown RBP11.28□□□□□ -0.6
LSM1-203ENST00000520755 LINC00322Q6ZN03 302 aaPredicted RBP11.28□□□□□ -0.6
LSM1-203ENST00000520755 SBSPONQ8IVN8 264 aa11.28□□□□□ -0.6
LSM1-203ENST00000520755 STHQ8IWL8 128 aa11.28□□□□□ -0.6
LSM1-203ENST00000520755 RXFP4Q8TDU9 374 aa11.28□□□□□ -0.6
LSM1-203ENST00000520755 NKX6-2Q9C056 277 aaPredicted RBP11.28□□□□□ -0.6
LSM1-203ENST00000520755 EPDR1Q9UM22 224 aa11.28□□□□□ -0.6
LSM1-203ENST00000520755 HLA-DRB4X5D2U9 266 aa11.28□□□□□ -0.6
LSM1-203ENST00000520755 NPIPB6E9PJ23 425 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 PEX7O00628 323 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 GOLT1AQ6ZVE7 132 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 ARL6IP6Q8N6S5 226 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 CMTM2Q8TAZ6 248 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 C2CD4CQ8TF44 421 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 C11orf52Q96A22 123 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 VGLL1Q99990 258 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 ATG101Q9BSB4 218 aa11.27□□□□□ -0.61
LSM1-203ENST00000520755 TRAV8-1A0A0A6YYK1 113 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 C9JQL5 133 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 H3BMM0 161 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 IGLV2-11P01706 119 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 TAGLN2P37802 199 aaKnown RBP11.26□□□□□ -0.61
LSM1-203ENST00000520755 CSN1S1P47710 185 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 CNN1P51911 297 aaKnown RBP11.26□□□□□ -0.61
LSM1-203ENST00000520755 HIST1H1AQ02539 215 aaPredicted RBP11.26□□□□□ -0.61
LSM1-203ENST00000520755 ERCC8Q13216 396 aa11.26□□□□□ -0.61
LSM1-203ENST00000520755 TRPT1Q86TN4 253 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms