RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CRXO43186 299 aaPredicted RBP9.4□□□□□ -0.9
SYNPO-204ENST00000519664 PAX8Q06710 450 aa9.4□□□□□ -0.9
SYNPO-204ENST00000519664 MRPL27Q9P0M9 148 aaKnown RBP9.4□□□□□ -0.9
SYNPO-204ENST00000519664 G3V318 75 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 H3BUX3 64 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 SNCGO76070 127 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 CFHR2P36980 270 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 SAMD5Q5TGI4 173 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 SYT8Q8NBV8 401 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 ZNF48Q96MX3 618 aaPredicted RBP9.4□□□□□ -0.91
SYNPO-204ENST00000519664 JMJD8Q96S16 334 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 CYSLTR1Q9Y271 337 aa9.4□□□□□ -0.91
SYNPO-204ENST00000519664 K7EP13 123 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 SAA4P35542 130 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 MSMPQ1L6U9 139 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 Q6ZSR3 168 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 F2Z2F3 143 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 ERCC8Q13216 396 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 SLAQ13239 276 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 MAPK1IP1LQ8NDC0 245 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 ITLN2Q8WWU7 325 aaPredicted RBP9.39□□□□□ -0.91
SYNPO-204ENST00000519664 IFI27L1Q96BM0 104 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 HBDP02042 147 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 IGFL3Q6UXB1 125 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 TEX29Q8N6K0 151 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 ATP6V0BQ99437 205 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 APOMO95445 188 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 YPEL3P61236 119 aaPredicted RBP9.39□□□□□ -0.91
SYNPO-204ENST00000519664 CTSZQ9UBR2 303 aa9.39□□□□□ -0.91
SYNPO-204ENST00000519664 A0A087X0K7 114 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 TRAV41A0A0B4J266 112 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 EFNA4P52798 201 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 PYGO2Q9BRQ0 406 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 KRTAP27-1Q3LI81 207 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 TTC9CQ8N5M4 171 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 RNF182Q8N6D2 247 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 DSCAML1Q8TD84 2053 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 CHCHD1Q96BP2 118 aaKnown RBP9.38□□□□□ -0.91
SYNPO-204ENST00000519664 SPRY4Q9C004 299 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 NDUFB8O95169 186 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 TMEM213A2RRL7 107 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.38□□□□□ -0.91
SYNPO-204ENST00000519664 ZNF688P0C7X2 276 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 PRTN3P24158 256 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 PIP4P1Q86T03 277 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 OR9G4Q8NGQ1 327 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 C18orf32Q8TCD1 76 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 V9GYV3 84 aa9.38□□□□□ -0.91
SYNPO-204ENST00000519664 K7ENP7 123 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 SH2D1AO60880 128 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 RUSC1-AS1Q66K80 236 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 ZNF833PQ6ZTB9 187 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 ATP5L2Q7Z4Y8 100 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 SLC50A1Q9BRV3 221 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 SLC25A2Q9BXI2 301 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 NHP2Q9NX24 153 aaKnown RBP9.37□□□□□ -0.91
SYNPO-204ENST00000519664 LY96Q9Y6Y9 160 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 TMEM131Q92545 1883 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 UTF1Q5T230 341 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 NPIPB6E9PJ23 425 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 K7EN84 100 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 IGLV2-14P01704 120 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 PPBPP02775 128 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 MORN5Q5VZ52 161 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 LRRK2Q5S007 2527 aa9.37□□□□□ -0.91
SYNPO-204ENST00000519664 ATP5LO75964 103 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 LGALS3P17931 250 aaKnown RBP9.36□□□□□ -0.91
SYNPO-204ENST00000519664 PSG3Q16557 428 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 C17orf77Q96MU5 243 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 NPFFR1Q9GZQ6 430 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 A0A1B0GW15 77 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 IFI27P40305 119 aaPredicted RBP9.36□□□□□ -0.91
SYNPO-204ENST00000519664 PRR20EP86478 221 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 PRR20CP86479 221 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 PRR20DP86480 221 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 PRR20BP86481 221 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 PRR20AP86496 221 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 SEM1Q6ZVN7 128 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 Q86TA4 180 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 FAM231BA6NCW3 169 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 PRSS47A8MTI9 375 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 TOMM40O96008 361 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 SIGLEC15Q6ZMC9 328 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 Q8TCH9 128 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 IGKV3D-20A0A0C4DH25 116 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 RASL11AQ6T310 242 aa9.36□□□□□ -0.91
SYNPO-204ENST00000519664 GAGE13Q4V321 117 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 RAX2Q96IS3 184 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 RITA1Q96K30 269 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 C8orf49Q96NF6 230 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 RCHY1Q96PM5 261 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 GEMIN7Q9H840 131 aaKnown RBP9.35□□□□□ -0.91
SYNPO-204ENST00000519664 TMEM249Q2WGJ8 235 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 ZNF562Q6V9R5 426 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 Q6ZVH6 145 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 GTSCR1Q86UQ5 136 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 SHANK2-AS3Q9BTD1 123 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 CFAP54Q96N23 3096 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 PKD1L2Q7Z442 2459 aa9.35□□□□□ -0.91
SYNPO-204ENST00000519664 C22orf46C9J442 243 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms