RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 LINC01587Q99440 93 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 PFDN5Q99471 154 aa8.21□□□□□ -1.1
VCAN-212ENST00000515397 WDR61Q9GZS3 305 aaKnown RBP8.21□□□□□ -1.1
VCAN-212ENST00000515397 YTHDF2Q9Y5A9 579 aaKnown RBP8.21□□□□□ -1.1
VCAN-212ENST00000515397 IGHV4-4A0A075B6R2 117 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 SMIM9A6NGZ8 99 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 C11orf94C9JXX5 98 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 BOLA2-SMG1P6H3BVE0 249 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 NDUFB4O95168 129 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 INSP01308 110 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 RPL12P30050 165 aaKnown RBP8.2□□□□□ -1.1
VCAN-212ENST00000515397 EXOC3-AS1Q8N2X6 119 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 FAM167A-AS1Q96KT0 104 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 SLC50A1Q9BRV3 221 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 SLC25A2Q9BXI2 301 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 DKK2Q9UBU2 259 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 RNF24Q9Y225 148 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 HSPB11Q9Y547 144 aa8.2□□□□□ -1.1
VCAN-212ENST00000515397 EPPK1P58107 5090 aaKnown RBP8.19□□□□□ -1.1
VCAN-212ENST00000515397 TRBV19A0A075B6N1 114 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 MPDU1O75352 247 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 OR10J4P0C629 311 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 CT45A10P0DMU9 189 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 CXCL2P19875 107 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 Q5BKY6 102 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 OR10J6PQ8NGY7 276 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 ATP5SQ99766 215 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 TIMM9Q9Y5J7 89 aa8.19□□□□□ -1.1
VCAN-212ENST00000515397 TMEM189A5PLL7 270 aa8.18□□□□□ -1.1
VCAN-212ENST00000515397 AMBPP02760 352 aa8.18□□□□□ -1.1
VCAN-212ENST00000515397 HIST1H1EP10412 219 aaKnown RBP8.18□□□□□ -1.1
VCAN-212ENST00000515397 FFAR4Q5NUL3 377 aa8.18□□□□□ -1.1
VCAN-212ENST00000515397 LGALS9CQ6DKI2 356 aa8.18□□□□□ -1.1
VCAN-212ENST00000515397 NIPSNAP3BQ9BS92 247 aa8.18□□□□□ -1.1
VCAN-212ENST00000515397 MED28Q9H204 178 aa8.18□□□□□ -1.1
VCAN-212ENST00000515397 PTTG1O95997 202 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 IFNA5P01569 189 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 PET100P0DJ07 73 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 DEFB130BP0DP73 79 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 DEFB130AP0DP74 79 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 CDKN1BP46527 198 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 ICAM4Q14773 271 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 GUK1Q16774 197 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 GFI1BQ5VTD9 330 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 FAM122CQ6P4D5 195 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 SCGB1C1Q8TD33 95 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 PAXXQ9BUH6 204 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 OR51M1Q9H341 326 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 TMEM14CQ9P0S9 112 aa8.17□□□□□ -1.1
VCAN-212ENST00000515397 IGKV2-40A0A087WW87 121 aaPredicted RBP8.16□□□□□ -1.1
VCAN-212ENST00000515397 TRAV12-3A0A0B4J271 114 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 PLAC8L1A1L4L8 177 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 C17orf112F2Z3M2 114 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 IGKV2D-40P01614 121 aaPredicted RBP8.16□□□□□ -1.1
VCAN-212ENST00000515397 NBEAP1P0C6P0 100 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 DAD1P61803 113 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 RNF141Q8WVD5 230 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 ZNF503Q96F45 646 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 VGLL1Q99990 258 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 AGPAT4-IT1Q9H0P7 198 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 FUT9Q9Y231 359 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 VPS13DQ5THJ4 4388 aa8.16□□□□□ -1.1
VCAN-212ENST00000515397 NPIPB6E9PJ23 425 aa8.15□□□□□ -1.1
VCAN-212ENST00000515397 HMGB3O15347 200 aaKnown RBP8.15□□□□□ -1.1
VCAN-212ENST00000515397 OR7C2O60412 319 aa8.15□□□□□ -1.1
VCAN-212ENST00000515397 TAS2R60P59551 318 aa8.15□□□□□ -1.1
VCAN-212ENST00000515397 Q6ZQT7 251 aa8.15□□□□□ -1.1
VCAN-212ENST00000515397 FXYD5Q96DB9 178 aa8.15□□□□□ -1.1
VCAN-212ENST00000515397 PHYHIPLQ96FC7 376 aa8.15□□□□□ -1.1
VCAN-212ENST00000515397 NOP10Q9NPE3 64 aaKnown RBP8.15□□□□□ -1.1
VCAN-212ENST00000515397 TSPOP30536 169 aa8.14□□□□□ -1.11
VCAN-212ENST00000515397 RAB2AP61019 212 aa8.14□□□□□ -1.11
VCAN-212ENST00000515397 RANP62826 216 aaKnown RBP8.14□□□□□ -1.11
VCAN-212ENST00000515397 CD300CQ08708 224 aa8.14□□□□□ -1.11
VCAN-212ENST00000515397 NDUFAF3Q9BU61 184 aa8.14□□□□□ -1.11
VCAN-212ENST00000515397 KRTAP17-1Q9BYP8 105 aa8.14□□□□□ -1.11
VCAN-212ENST00000515397 BIRC6Q9NR09 4857 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 ZNF253O75346 499 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 RNASE4P34096 147 aaKnown RBP8.13□□□□□ -1.11
VCAN-212ENST00000515397 LEPP41159 167 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 BTN1A1Q13410 526 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 TMEM88Q6PEY1 159 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 HSD17B11Q8NBQ5 300 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 HYLS1Q96M11 299 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 MRPL32Q9BYC8 188 aaKnown RBP8.13□□□□□ -1.11
VCAN-212ENST00000515397 AAMDCQ9H7C9 122 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 KCNIP2Q9NS61 270 aa8.13□□□□□ -1.11
VCAN-212ENST00000515397 F5H768 121 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 H7BYZ3 331 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 TCTAP57738 103 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 UBE2L3P68036 154 aaKnown RBP8.12□□□□□ -1.11
VCAN-212ENST00000515397 PDE6HQ13956 83 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 PRR9Q5T870 116 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 TMEM256Q8N2U0 113 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 Q8TAT8 98 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 MRPL53Q96EL3 112 aaKnown RBP8.12□□□□□ -1.11
VCAN-212ENST00000515397 Q9H3A6 140 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 PRELID1Q9Y255 219 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 DNAH10Q8IVF4 4471 aa8.12□□□□□ -1.11
VCAN-212ENST00000515397 FXYD6-FXYD2A0A087WZ82 144 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms