RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZC2HC1BQ5TFG8 222 aa10.19□□□□□ -0.78
USP53-209ENST00000514665 CHTOPQ9Y3Y2 248 aaKnown RBP10.19□□□□□ -0.78
USP53-209ENST00000514665 OVOL1O14753 267 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 NDUFB8O95169 186 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 HSD52Q0P140 79 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 STPG4Q8N801 248 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 PRSS22Q9GZN4 317 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 FCN3O75636 299 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 SEC11AP67812 179 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 ZNF562Q6V9R5 426 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 A0A0C4DFX4 3053 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 LYPD1Q8N2G4 141 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 TRGV2A0A075B6R0 118 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 M0R1W7 72 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 CEACAM8P31997 349 aaPredicted RBP10.18□□□□□ -0.78
USP53-209ENST00000514665 YPEL3P61236 119 aaPredicted RBP10.18□□□□□ -0.78
USP53-209ENST00000514665 LAGE3Q14657 143 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 PLA2G2CQ5R387 149 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 ZNF833PQ6ZTB9 187 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 TMEM158Q8WZ71 300 aa10.18□□□□□ -0.78
USP53-209ENST00000514665 PF4P02776 101 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 GNLYP22749 145 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 TDGF1P3P51864 188 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 ZNF479Q96JC4 524 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 SLC25A2Q9BXI2 301 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 NUP210Q8TEM1 1887 aaPredicted RBP10.17□□□□□ -0.78
USP53-209ENST00000514665 G3V318 75 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 RNF182Q8N6D2 247 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 TRAV12-3A0A0B4J271 114 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 TMEM8BA6NDV4 472 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 SPRNQ5BIV9 151 aa10.17□□□□□ -0.78
USP53-209ENST00000514665 TRAV2A0A0B4J234 112 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 Q8TCH9 128 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 C20orf144Q9BQM9 153 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 RIPPLY3P57055 190 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 PRR20EP86478 221 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 PRR20CP86479 221 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 PRR20DP86480 221 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 PRR20BP86481 221 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 PRR20AP86496 221 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 IGHV3-73A0A0B4J1V6 119 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 DNAL4O96015 105 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 TTC32Q5I0X7 151 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 C9orf139Q6ZV77 190 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 OR9G4Q8NGQ1 327 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 CDH23Q9H251 3354 aa10.16□□□□□ -0.78
USP53-209ENST00000514665 SAMD5Q5TGI4 173 aa10.15□□□□□ -0.78
USP53-209ENST00000514665 DOPEY1Q5JWR5 2465 aa10.15□□□□□ -0.78
USP53-209ENST00000514665 TRBV19A0A075B6N1 114 aa10.15□□□□□ -0.78
USP53-209ENST00000514665 TEX29Q8N6K0 151 aa10.15□□□□□ -0.78
USP53-209ENST00000514665 C8orf49Q96NF6 230 aa10.15□□□□□ -0.78
USP53-209ENST00000514665 OVOL3O00110 214 aa10.15□□□□□ -0.78
USP53-209ENST00000514665 DUSP14O95147 198 aaKnown RBP10.15□□□□□ -0.78
USP53-209ENST00000514665 C2orf16Q68DN1 1984 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 K7EM74 188 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 ATP6V0E1O15342 81 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 SSBP2P81877 361 aaPredicted RBP10.15□□□□□ -0.79
USP53-209ENST00000514665 ZNF876PQ49A33 203 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 SAMD13Q5VXD3 122 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 IGFL3Q6UXB1 125 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 C11orf52Q96A22 123 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 RHPN1-AS1Q9BWJ2 59 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 NCOR1P1Q9H4R4 102 aa10.15□□□□□ -0.79
USP53-209ENST00000514665 IGFBPL1Q8WX77 278 aa10.14□□□□□ -0.79
USP53-209ENST00000514665 TMEM101Q96IK0 257 aa10.14□□□□□ -0.79
USP53-209ENST00000514665 HOXA3O43365 443 aaPredicted RBP10.14□□□□□ -0.79
USP53-209ENST00000514665 CD28P10747 220 aa10.14□□□□□ -0.79
USP53-209ENST00000514665 TEX36Q5VZQ5 186 aa10.14□□□□□ -0.79
USP53-209ENST00000514665 RUSC1-AS1Q66K80 236 aa10.14□□□□□ -0.79
USP53-209ENST00000514665 RCHY1Q96PM5 261 aa10.14□□□□□ -0.79
USP53-209ENST00000514665 K7EN84 100 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 IGLC2P0DOY2 106 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 IGLC3P0DOY3 106 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 PDE6HQ13956 83 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 Q6ZSR3 168 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 A0A087WWL8 130 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 TRBV7-1A0A0A6YYK4 115 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 H3BRM9 83 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 WISP2O76076 250 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 SCGB1A1P11684 91 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 HTN3P15516 51 aa10.13□□□□□ -0.79
USP53-209ENST00000514665 IGLC1P0CG04 106 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 STHQ8IWL8 128 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 FXYD5Q96DB9 178 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 DPH3P1Q9H4G8 78 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 PEMTQ9UBM1 199 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 SMPXQ9UHP9 88 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 TNFRSF6BO95407 300 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 UBE2V1Q13404 147 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 POU2AF1Q16633 256 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 ZNF492Q9P255 531 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 K7ENP7 123 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 IGLL1P15814 213 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 CTSZQ9UBR2 303 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 LINC00311Q8N616 119 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 LINC00477Q96M19 166 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 CSTL1Q9H114 145 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 YAE1D1Q9NRH1 226 aa10.12□□□□□ -0.79
USP53-209ENST00000514665 B4DSR2 109 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 IGHV4-39P01824 125 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms