RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CFHR4Q92496 578 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 RHPN1-AS1Q9BWJ2 59 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 TMEM14BQ9NUH8 114 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 IGHV1OR15-1A0A075B7D0 117 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 SAP30O75446 220 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 SLC25A45Q8N413 288 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 SLC25A29Q8N8R3 303 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 THAP8Q8NA92 274 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 SP7Q8TDD2 431 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 OPRPNQ99935 248 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 DOT1LQ8TEK3 1739 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 RFPL3SP0C7P2 107 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 NREPQ16612 68 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 ESPL1Q14674 2120 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 TDRD6O60522 2096 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 Q6P435 159 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 MRPL53Q96EL3 112 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 ICOSQ9Y6W8 199 aa9.04□□□□□ -0.96
LIMCH1-217ENST00000512946 PSCAO43653 123 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 FAM27E3Q08E93 113 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 PIFOQ8TCI5 191 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 WFDC12Q8WWY7 111 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 U3KQE9 123 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 IGHV3-73A0A0B4J1V6 119 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 IGHV1-46P01743 117 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 MIA3Q5JRA6 1907 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 IGHV3OR16-10A0A075B7F0 116 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 LINC00473A8K010 186 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 ZNF837Q96EG3 531 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 LINC00479Q96M42 142 aa9.03□□□□□ -0.96
LIMCH1-217ENST00000512946 FAM236DA0A1B0GTK5 79 aa9.02□□□□□ -0.96
LIMCH1-217ENST00000512946 FAM236CP0DP71 79 aa9.02□□□□□ -0.96
LIMCH1-217ENST00000512946 Q6ZRM9 215 aa9.02□□□□□ -0.96
LIMCH1-217ENST00000512946 FAM110DQ8TAY7 271 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-217ENST00000512946 TRAV3A0A0B4J244 114 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 NDUFV3P56181 108 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 UBE2DNLQ8IWF7 75 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 ZNF318Q5VUA4 2279 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 K7ERS5 55 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 PSPNO60542 156 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 PROP1O75360 226 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 CRYGCP07315 174 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 CRYGBP07316 175 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 DKK2Q9UBU2 259 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 ITGBL1O95965 494 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 TMEM200BQ69YZ2 307 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 VMO1Q7Z5L0 202 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 DOCK9Q9BZ29 2069 aa9.02□□□□□ -0.97
LIMCH1-217ENST00000512946 UBE2BP63146 152 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 WFDC2Q14508 124 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 FOXL2NBQ6ZUU3 175 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 SPTBP11277 2137 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 IGKV1-27A0A075B6S5 117 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 A0A0G2JRQ6 117 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 BUB1B-PAK6H3BSN5 160 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 APC2O95996 2303 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 RBAKDNA6NC62 111 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 PAX9P55771 341 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 C8orf31Q8N9H6 132 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 NDUFA4L2Q9NRX3 87 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 SPAARA0A1B0GVQ0 90 aa9.01□□□□□ -0.97
LIMCH1-217ENST00000512946 H3BRN7 92 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 LTAP01374 205 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 ZNF726P1Q15940 193 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 DYNAPQ8N1N2 210 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 IMUPQ9GZP8 106 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 CYYR1Q96J86 154 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 IGHV1-18A0A0C4DH31 117 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 LINC01560Q8TB33 94 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 TMEM178BH3BS89 294 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 NDUFS5O43920 106 aa9□□□□□ -0.97
LIMCH1-217ENST00000512946 CELA3BP08861 270 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 LMO1P25800 156 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 PTPRZ1P23471 2315 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 STPG1Q5TH74 334 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 PCP2Q8IVA1 136 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 NHSQ6T4R5 1651 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 FAM186AA6NE01 2351 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 IGKV3D-7A0A0C4DH55 119 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 CLPSL1A2RUU4 121 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 TMEM256-PLSCR3K7ERE1 68 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 C3orf22Q8N5N4 141 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 CD177Q8N6Q3 437 aa8.99□□□□□ -0.97
LIMCH1-217ENST00000512946 GBF1Q92538 1859 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 SCN7AQ01118 1682 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 C9orf106Q8NAJ2 232 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 COL18A1P39060 1754 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 A4D1N5 150 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 TGFBR3LH3BV60 316 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 METRNQ9UJH8 293 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 IGHV3-53P01767 116 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 FGFBP3Q8TAT2 258 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 RNF183Q96D59 192 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 SCN2AQ99250 2005 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 NDUFA4O00483 81 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 NXPH4O95158 308 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 PIP4P2Q8N4L2 257 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 Q9H8V8 135 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 LINC00527Q9UJ94 153 aa8.98□□□□□ -0.97
LIMCH1-217ENST00000512946 LRRC75A-AS1Q8N1F1 130 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms