RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TMEM78Q5T7P6 136 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 C10orf126Q8N4M7 172 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 FAM57AQ8TBR7 257 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 HIGD1AQ9Y241 93 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 IGHV3-21A0A0B4J1V1 117 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 DNPH1O43598 174 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 PRCDQ00LT1 54 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 C9orf153Q5TBE3 101 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 MDFICQ9P1T7 246 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 KIAA0100Q14667 2235 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-213ENST00000511496 TRAV2A0A0B4J234 112 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 PRR30Q53SZ7 412 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 TRPT1Q86TN4 253 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 Q8N1Y9 231 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 ATP5LO75964 103 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 UBE2D3P61077 147 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 UBE2D2P62837 147 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 A0A1W2PPI3 338 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 LILRA5A6NI73 299 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 ZNF785A8K8V0 405 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 NPFFO15130 113 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 GATA1P15976 413 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 KIR2DS2P43631 304 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 CXCL12P48061 93 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 C2orf83Q53S99 150 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 Q6Q795 121 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 C1orf162Q8NEQ5 155 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 ODF3Q96PU9 254 aa9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 MRPL36Q9P0J6 103 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-213ENST00000511496 ZNF56Q15929 161 aa9.51□□□□□ -0.89
LIMCH1-213ENST00000511496 MYOZ3Q8TDC0 251 aa9.51□□□□□ -0.89
LIMCH1-213ENST00000511496 TEX49A0A1B0GTD5 131 aa9.51□□□□□ -0.89
LIMCH1-213ENST00000511496 IGHV4-34P06331 123 aa9.51□□□□□ -0.89
LIMCH1-213ENST00000511496 VKORC1Q9BQB6 163 aa9.51□□□□□ -0.89
LIMCH1-213ENST00000511496 CD7P09564 240 aa9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 U3KQK5 164 aa9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 PTPRBP23467 1997 aa9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 SPTBN5Q9NRC6 3674 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 C15orf65H3BRN8 121 aa9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 FSTL3O95633 263 aa9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 CRIP1P50238 77 aa9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 ERHP84090 104 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 CFHR1Q03591 330 aa9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 LGALS1P09382 135 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 ZNF474Q6S9Z5 364 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-213ENST00000511496 ZNF815PA8K554 130 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 IGKV1-16P04430 117 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 KLK15Q9H2R5 256 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 SSUH2Q9Y2M2 353 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 HERVK_113P63121 156 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 MZT1Q08AG7 82 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 PLXDC1Q8IUK5 500 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 MSRB1Q9NZV6 116 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 PRR14LQ5THK1 2151 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 CEP192Q8TEP8 1941 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 UPK2O00526 184 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 IGLV2-11P01706 119 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 SAA2P0DJI9 122 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 EFNA4P52798 201 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 MFAP4P55083 255 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 GGNQ86UU5 652 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 PLEKHB2Q96CS7 222 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 C8orf49Q96NF6 230 aa9.49□□□□□ -0.89
LIMCH1-213ENST00000511496 DNAJC13O75165 2243 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 TNFRSF4P43489 277 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 PEAR1Q5VY43 1037 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 SBSPONQ8IVN8 264 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 CTSZQ9UBR2 303 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 IGKV1D-37A0A075B6S9 117 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 RFPL3SP0C7P2 107 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 NDUFA11Q86Y39 141 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 GATD1Q8NB37 220 aa9.48□□□□□ -0.89
LIMCH1-213ENST00000511496 E7EUB6 86 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 J3KT08 172 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 DUSP14O95147 198 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 APELAP0DMC3 54 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 UBE2D1P51668 147 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 SPRNQ5BIV9 151 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 C10orf55Q5SWW7 151 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 TMEM101Q96IK0 257 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 PRADC1Q9BSG0 188 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 ICE1Q9Y2F5 2266 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 FAM236AA0A1B0GUQ0 79 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 FAM236BA0A1B0GV22 79 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 SS18L1O75177 396 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 TNFRSF6BO95407 300 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 KLHL30-AS1Q8NEE0 82 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 BEX4Q9NWD9 120 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 IGHV4-39P01824 125 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 IGLC6P0CF74 106 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 MDP1Q86V88 176 aa9.47□□□□□ -0.89
LIMCH1-213ENST00000511496 F5H768 121 aa9.46□□□□□ -0.89
LIMCH1-213ENST00000511496 DKK1O94907 266 aa9.46□□□□□ -0.89
LIMCH1-213ENST00000511496 CFIP05156 583 aa9.46□□□□□ -0.89
LIMCH1-213ENST00000511496 OR13C6PQ8NH95 151 aa9.46□□□□□ -0.89
LIMCH1-213ENST00000511496 IGHV1OR21-1A0A087WYE8 117 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 NDUFA7O95182 113 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 LOXL3P58215 753 aa9.46□□□□□ -0.9
LIMCH1-213ENST00000511496 RUSC1-AS1Q66K80 236 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms