RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 RHPN1-AS1Q9BWJ2 59 aa9.05□□□□□ -0.96
LIMCH1-208ENST00000508501 TMEM14BQ9NUH8 114 aa9.05□□□□□ -0.96
LIMCH1-208ENST00000508501 IGHV1OR15-1A0A075B7D0 117 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 SAP30O75446 220 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 SLC25A45Q8N413 288 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 SLC25A29Q8N8R3 303 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 THAP8Q8NA92 274 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 SP7Q8TDD2 431 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 OPRPNQ99935 248 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 DOT1LQ8TEK3 1739 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 RFPL3SP0C7P2 107 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 NREPQ16612 68 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 ESPL1Q14674 2120 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 TDRD6O60522 2096 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 Q6P435 159 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 MRPL53Q96EL3 112 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 ICOSQ9Y6W8 199 aa9.04□□□□□ -0.96
LIMCH1-208ENST00000508501 PSCAO43653 123 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 FAM27E3Q08E93 113 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 PIFOQ8TCI5 191 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 WFDC12Q8WWY7 111 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 U3KQE9 123 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 IGHV3-73A0A0B4J1V6 119 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 IGHV1-46P01743 117 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 MIA3Q5JRA6 1907 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 IGHV3OR16-10A0A075B7F0 116 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 LINC00473A8K010 186 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 ZNF837Q96EG3 531 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 LINC00479Q96M42 142 aa9.03□□□□□ -0.96
LIMCH1-208ENST00000508501 FAM236DA0A1B0GTK5 79 aa9.02□□□□□ -0.96
LIMCH1-208ENST00000508501 FAM236CP0DP71 79 aa9.02□□□□□ -0.96
LIMCH1-208ENST00000508501 Q6ZRM9 215 aa9.02□□□□□ -0.96
LIMCH1-208ENST00000508501 FAM110DQ8TAY7 271 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-208ENST00000508501 TRAV3A0A0B4J244 114 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 NDUFV3P56181 108 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 UBE2DNLQ8IWF7 75 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 ZNF318Q5VUA4 2279 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 K7ERS5 55 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 PSPNO60542 156 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 PROP1O75360 226 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 CRYGCP07315 174 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 CRYGBP07316 175 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 DKK2Q9UBU2 259 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 ITGBL1O95965 494 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 TMEM200BQ69YZ2 307 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 VMO1Q7Z5L0 202 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 DOCK9Q9BZ29 2069 aa9.02□□□□□ -0.97
LIMCH1-208ENST00000508501 UBE2BP63146 152 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 WFDC2Q14508 124 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 FOXL2NBQ6ZUU3 175 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 SPTBP11277 2137 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 IGKV1-27A0A075B6S5 117 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 A0A0G2JRQ6 117 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 BUB1B-PAK6H3BSN5 160 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 APC2O95996 2303 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 RBAKDNA6NC62 111 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 PAX9P55771 341 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 C8orf31Q8N9H6 132 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 NDUFA4L2Q9NRX3 87 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 SPAARA0A1B0GVQ0 90 aa9.01□□□□□ -0.97
LIMCH1-208ENST00000508501 H3BRN7 92 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 LTAP01374 205 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 ZNF726P1Q15940 193 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 DYNAPQ8N1N2 210 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 IMUPQ9GZP8 106 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 CYYR1Q96J86 154 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 IGHV1-18A0A0C4DH31 117 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 LINC01560Q8TB33 94 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 TMEM178BH3BS89 294 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 NDUFS5O43920 106 aa9□□□□□ -0.97
LIMCH1-208ENST00000508501 CELA3BP08861 270 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 LMO1P25800 156 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 PTPRZ1P23471 2315 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 STPG1Q5TH74 334 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 PCP2Q8IVA1 136 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 NHSQ6T4R5 1651 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 FAM186AA6NE01 2351 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 IGKV3D-7A0A0C4DH55 119 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 CLPSL1A2RUU4 121 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 TMEM256-PLSCR3K7ERE1 68 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 C3orf22Q8N5N4 141 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 CD177Q8N6Q3 437 aa8.99□□□□□ -0.97
LIMCH1-208ENST00000508501 GBF1Q92538 1859 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 SCN7AQ01118 1682 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 C9orf106Q8NAJ2 232 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 COL18A1P39060 1754 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 A4D1N5 150 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 TGFBR3LH3BV60 316 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 METRNQ9UJH8 293 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 IGHV3-53P01767 116 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 FGFBP3Q8TAT2 258 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 RNF183Q96D59 192 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 SCN2AQ99250 2005 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 NDUFA4O00483 81 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 NXPH4O95158 308 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 PIP4P2Q8N4L2 257 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 Q9H8V8 135 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 LINC00527Q9UJ94 153 aa8.98□□□□□ -0.97
LIMCH1-208ENST00000508501 LRRC75A-AS1Q8N1F1 130 aa8.97□□□□□ -0.97
LIMCH1-208ENST00000508501 RTTNQ86VV8 2226 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms