RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CXorf1O96002 111 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 OR5AL1P0C617 328 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 HOXD3P31249 432 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-207ENST00000507401 INSL3P51460 131 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 KRTDAPP60985 99 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 PSG5Q15238 335 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 C19orf54Q5BKX5 351 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 C9orf66Q5T8R8 295 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 PDPNQ86YL7 162 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 OR11H1Q8NG94 326 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 OR1L6Q8NGR2 347 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 OR1N2Q8NGR9 330 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 FLYWCH2Q96CP2 140 aaKnown RBP6.21□□□□□ -1.42
SCN1A-207ENST00000507401 COMMD5Q9GZQ3 224 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 KLK15Q9H2R5 256 aa6.21□□□□□ -1.42
SCN1A-207ENST00000507401 COL7A1Q02388 2944 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 CRXO43186 299 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-207ENST00000507401 PAGE4O60829 102 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 BRI3O95415 125 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 APOA2P02652 100 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 EGR2P11161 476 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-207ENST00000507401 TFPI2P48307 235 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 FGF8P55075 233 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-207ENST00000507401 RPS16P62249 146 aaKnown RBP6.2□□□□□ -1.42
SCN1A-207ENST00000507401 KLF5Q13887 457 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-207ENST00000507401 PLGLAQ15195 96 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 RNF151Q2KHN1 245 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 DEFB136Q30KP8 78 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 FFAR4Q5NUL3 377 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 ZNF818PQ6ZRF7 136 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 PPP1R27Q86WC6 154 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 Q8N976 141 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 OR5A1Q8NGJ0 315 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 DUX3Q96PT4 197 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 FBXL15Q9H469 300 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 FBXL7Q9UJT9 491 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 RPH3ALQ9UNE2 315 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 FOXA2Q9Y261 457 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-207ENST00000507401 OR51B2Q9Y5P1 312 aa6.2□□□□□ -1.42
SCN1A-207ENST00000507401 UBE2L5PA0A1B0GUS4 154 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 A0A1W2PPV4 95 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 SNURFLB1AK76 121 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 FNDC10F2Z333 226 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 J3QR89 54 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 IGKV1-16P04430 117 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 CRYGBP07316 175 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 OPRK1P41145 380 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 ATP5IP56385 69 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-207ENST00000507401 HIST1H1AQ02539 215 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-207ENST00000507401 RAB31Q13636 194 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 TMEM177Q53S58 311 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 SLC25A34Q6PIV7 304 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 ATP5L2Q7Z4Y8 100 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 ADTRPQ96IZ2 230 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 B9D2Q9BPU9 175 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 NPCDR1Q9BY65 106 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 ZNF430Q9H8G1 570 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-207ENST00000507401 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-207ENST00000507401 CACNG5Q9UF02 275 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 TP53TG3Q9ULZ0 132 aa6.19□□□□□ -1.42
SCN1A-207ENST00000507401 A0A1W2PS18 150 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 GAGE12BA1L429 117 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 A6NDN8 102 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 H3BUA1 57 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 ISLRO14498 428 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 RBFOX2O43251 390 aaKnown RBP eCLIP6.18□□□□□ -1.42
SCN1A-207ENST00000507401 NDUFB4O95168 129 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 CA2P00918 260 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 IGLV2-23P01705 113 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 C3orf79P0CE67 100 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 NHLRC4P0CG21 123 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-207ENST00000507401 MED14OSP0DP75 135 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 CRYBB3P26998 211 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 LINC00310P59036 64 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 LINC00205P59089 165 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 UBE2G1P62253 170 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 GNB1P62873 340 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 NDPQ00604 133 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 FXYD3Q14802 87 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 ECSCRQ19T08 205 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 KRTAP19-4Q3LI73 84 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 OR4A47Q6IF82 309 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 ACSM6Q6P461 480 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 UNQ5815/PRO19632Q6UWF5 114 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 MMD2Q8IY49 270 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 CHCHD1Q96BP2 118 aaKnown RBP6.18□□□□□ -1.42
SCN1A-207ENST00000507401 TMEM191AQ9H0A3 160 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 OR2D2Q9H210 308 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 VSIRQ9H7M9 311 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 GNB4Q9HAV0 340 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 TMEM167BQ9NRX6 74 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 NAT8BQ9UHF3 227 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 SMPXQ9UHP9 88 aa6.18□□□□□ -1.42
SCN1A-207ENST00000507401 LSM4Q9Y4Z0 139 aaKnown RBP6.18□□□□□ -1.42
SCN1A-207ENST00000507401 A0A0G2JLM5 398 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 LINC01619G3V211 115 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 SLC25A17O43808 307 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 NUPR1O60356 82 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 OR7C2O60412 319 aa6.17□□□□□ -1.42
SCN1A-207ENST00000507401 CNIH1O95406 144 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms