RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 RNASE8Q8TDE3 154 aaKnown RBP8.12□□□□□ -1.11
COL6A3-213ENST00000493475 RNF141Q8WVD5 230 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 Q9H8V8 135 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 ZNF331Q9NQX6 463 aaPredicted RBP8.12□□□□□ -1.11
COL6A3-213ENST00000493475 DNAH2Q9P225 4427 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 TRAV26-1A0A087WT03 109 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 BCAP31P51572 246 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 FCN2Q15485 313 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 ZNF680Q8NEM1 530 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 RXFP4Q8TDU9 374 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 C17orf77Q96MU5 243 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 ODF3Q96PU9 254 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 PYGO2Q9BRQ0 406 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 PTTG2Q9NZH5 202 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 LINC00588Q9Y4M8 146 aa8.11□□□□□ -1.11
COL6A3-213ENST00000493475 TRGV2A0A075B6R0 118 aa8.1□□□□□ -1.11
COL6A3-213ENST00000493475 PLAC8L1A1L4L8 177 aa8.1□□□□□ -1.11
COL6A3-213ENST00000493475 ZNF701M0R085 212 aaPredicted RBP8.1□□□□□ -1.11
COL6A3-213ENST00000493475 EREGO14944 169 aa8.1□□□□□ -1.11
COL6A3-213ENST00000493475 CAMLGP49069 296 aa8.1□□□□□ -1.11
COL6A3-213ENST00000493475 CAV2P51636 162 aa8.1□□□□□ -1.11
COL6A3-213ENST00000493475 C20orf85Q9H1P6 137 aa8.1□□□□□ -1.11
COL6A3-213ENST00000493475 DNAJC4Q9NNZ3 241 aa8.1□□□□□ -1.11
COL6A3-213ENST00000493475 GAGE12BA1L429 117 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 GAGE7O76087 117 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 PRM2P04554 102 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 GAGE12FP0CL80 117 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 GAGE12GP0CL81 117 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 GAGE12IP0CL82 117 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 HBG1P69891 147 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 HBG2P69892 147 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 GFI1BQ5VTD9 330 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 STX12Q86Y82 276 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 MAPKAPK5-AS1Q8N8E1 139 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 MITD1Q8WV92 249 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 UPK3BQ9BT76 320 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 SRRQ9GZT4 340 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 RYR1P21817 5038 aa8.09□□□□□ -1.11
COL6A3-213ENST00000493475 LINC00854A0A1B0GVQ3 168 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 FAM25EA8MYX2 175 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 ZNF253O75346 499 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 SLC25A5P05141 298 aaKnown RBP8.08□□□□□ -1.12
COL6A3-213ENST00000493475 H2AFB1P0C5Y9 115 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 H2AFB2P0C5Z0 115 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 DAZ2Q13117 558 aaKnown RBP8.08□□□□□ -1.12
COL6A3-213ENST00000493475 PATE2Q6UY27 113 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 MRPL53Q96EL3 112 aaKnown RBP8.08□□□□□ -1.12
COL6A3-213ENST00000493475 Q9H3A6 140 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 AAMDCQ9H7C9 122 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 UQCC1Q9NVA1 299 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 PRELID1Q9Y255 219 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 TIMM9Q9Y5J7 89 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 DNAH11Q96DT5 4516 aa8.08□□□□□ -1.12
COL6A3-213ENST00000493475 TRAV12-3A0A0B4J271 114 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 A0A0J9YY99 117 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 C7orf66A4D0T2 115 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 C5orf51A6NDU8 294 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 J3KRW8 73 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 MRPS12O15235 138 aaKnown RBP8.07□□□□□ -1.12
COL6A3-213ENST00000493475 MBPP02686 304 aaPredicted RBP8.07□□□□□ -1.12
COL6A3-213ENST00000493475 HIST1H1EP10412 219 aaKnown RBP8.07□□□□□ -1.12
COL6A3-213ENST00000493475 S100A11P31949 105 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 BAXQ07812 192 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 OPCMLQ14982 345 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 NRARPQ7Z6K4 114 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 MGST2Q99735 147 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 FLVCR2Q9UPI3 526 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 RCL1Q9Y2P8 373 aaKnown RBP8.07□□□□□ -1.12
COL6A3-213ENST00000493475 MRPS16Q9Y3D3 137 aaKnown RBP8.07□□□□□ -1.12
COL6A3-213ENST00000493475 LSM5Q9Y4Y9 91 aaKnown RBP8.07□□□□□ -1.12
COL6A3-213ENST00000493475 MUC4Q99102 2169 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 DNAH17Q9UFH2 4485 aa8.07□□□□□ -1.12
COL6A3-213ENST00000493475 NACAE9PAV3 2078 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 C7orf71A4D174 169 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 NPIPB6E9PJ23 425 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 MPDU1O75352 247 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 CCNKO75909 580 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 IGLC2P0DOY2 106 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 SLAQ13239 276 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 PDE6HQ13956 83 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 SPATA12Q7Z6I5 190 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 LINC00612Q8N6U2 182 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 TMEM37Q8WXS4 190 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 LINC00477Q96M19 166 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 PKD1P98161 4303 aa8.06□□□□□ -1.12
COL6A3-213ENST00000493475 TRAV9-2A0A087WT02 112 aa8.05□□□□□ -1.12
COL6A3-213ENST00000493475 SNRPCP09234 159 aaKnown RBP8.05□□□□□ -1.12
COL6A3-213ENST00000493475 RPL29P47914 159 aaKnown RBP8.05□□□□□ -1.12
COL6A3-213ENST00000493475 BAK1Q16611 211 aa8.05□□□□□ -1.12
COL6A3-213ENST00000493475 ATP6V1FQ16864 119 aa8.05□□□□□ -1.12
COL6A3-213ENST00000493475 TMEM78Q5T7P6 136 aa8.05□□□□□ -1.12
COL6A3-213ENST00000493475 ARPC5LQ9BPX5 153 aa8.05□□□□□ -1.12
COL6A3-213ENST00000493475 KCNIP2Q9NS61 270 aa8.05□□□□□ -1.12
COL6A3-213ENST00000493475 SLC39A9Q9NUM3 307 aa8.05□□□□□ -1.12
COL6A3-213ENST00000493475 TRGV1A0A0A0MS02 117 aa8.04□□□□□ -1.12
COL6A3-213ENST00000493475 H3BTX0 84 aa8.04□□□□□ -1.12
COL6A3-213ENST00000493475 SLC17A3O00476 420 aa8.04□□□□□ -1.12
COL6A3-213ENST00000493475 RGS13O14921 159 aa8.04□□□□□ -1.12
COL6A3-213ENST00000493475 CST7O76096 145 aa8.04□□□□□ -1.12
COL6A3-213ENST00000493475 GPX1P07203 203 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms