RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 APLNQ9ULZ1 77 aa17.64■□□□□ 0.41
UPF3A-209ENST00000492270 KMT2AQ03164 3969 aa17.64■□□□□ 0.41
UPF3A-209ENST00000492270 ZNF705GA8MUZ8 300 aaPredicted RBP17.63■□□□□ 0.41
UPF3A-209ENST00000492270 FAM222AQ5U5X8 452 aa17.63■□□□□ 0.41
UPF3A-209ENST00000492270 MIR17HGQ75NE6 70 aa17.63■□□□□ 0.41
UPF3A-209ENST00000492270 PLA2G2EQ9NZK7 142 aa17.63■□□□□ 0.41
UPF3A-209ENST00000492270 DKK2Q9UBU2 259 aa17.63■□□□□ 0.41
UPF3A-209ENST00000492270 YTHDF2Q9Y5A9 579 aaKnown RBP17.63■□□□□ 0.41
UPF3A-209ENST00000492270 TRBV19A0A075B6N1 114 aa17.62■□□□□ 0.41
UPF3A-209ENST00000492270 DEFB131BA0A096LNP1 70 aa17.62■□□□□ 0.41
UPF3A-209ENST00000492270 LGALS9CQ6DKI2 356 aa17.62■□□□□ 0.41
UPF3A-209ENST00000492270 FAM167A-AS1Q96KT0 104 aa17.62■□□□□ 0.41
UPF3A-209ENST00000492270 IGHV4-4A0A075B6R2 117 aa17.61■□□□□ 0.41
UPF3A-209ENST00000492270 NDUFB4O95168 129 aa17.61■□□□□ 0.41
UPF3A-209ENST00000492270 KIR3DS1Q14943 382 aa17.61■□□□□ 0.41
UPF3A-209ENST00000492270 M0R3E3 92 aa17.6■□□□□ 0.41
UPF3A-209ENST00000492270 ZNF253O75346 499 aa17.6■□□□□ 0.41
UPF3A-209ENST00000492270 HIST1H1EP10412 219 aaKnown RBP17.6■□□□□ 0.41
UPF3A-209ENST00000492270 FCN2Q15485 313 aa17.6■□□□□ 0.41
UPF3A-209ENST00000492270 RPP25LQ8N5L8 163 aaKnown RBP17.6■□□□□ 0.41
UPF3A-209ENST00000492270 OR10J6PQ8NGY7 276 aa17.6■□□□□ 0.41
UPF3A-209ENST00000492270 BLNKQ8WV28 456 aa17.6■□□□□ 0.41
UPF3A-209ENST00000492270 KCNIP2Q9NS61 270 aa17.6■□□□□ 0.41
UPF3A-209ENST00000492270 C17orf112F2Z3M2 114 aa17.59■□□□□ 0.41
UPF3A-209ENST00000492270 CDKN1BP46527 198 aa17.59■□□□□ 0.41
UPF3A-209ENST00000492270 TCTAP57738 103 aa17.59■□□□□ 0.41
UPF3A-209ENST00000492270 WFDC1Q9HC57 220 aa17.59■□□□□ 0.41
UPF3A-209ENST00000492270 AZU1P20160 251 aa17.58■□□□□ 0.4
UPF3A-209ENST00000492270 NIPSNAP3BQ9BS92 247 aa17.58■□□□□ 0.4
UPF3A-209ENST00000492270 MED28Q9H204 178 aa17.58■□□□□ 0.4
UPF3A-209ENST00000492270 TIMM9Q9Y5J7 89 aa17.58■□□□□ 0.4
UPF3A-209ENST00000492270 NPIPB6E9PJ23 425 aa17.57■□□□□ 0.4
UPF3A-209ENST00000492270 FFAR4Q5NUL3 377 aa17.57■□□□□ 0.4
UPF3A-209ENST00000492270 EXOC3-AS1Q8N2X6 119 aa17.57■□□□□ 0.4
UPF3A-209ENST00000492270 LINC01587Q99440 93 aa17.57■□□□□ 0.4
UPF3A-209ENST00000492270 MRPL32Q9BYC8 188 aaKnown RBP17.57■□□□□ 0.4
UPF3A-209ENST00000492270 FUT9Q9Y231 359 aa17.57■□□□□ 0.4
UPF3A-209ENST00000492270 VPS13DQ5THJ4 4388 aa17.57■□□□□ 0.4
UPF3A-209ENST00000492270 TEX48A0A1B0GUV7 120 aa17.56■□□□□ 0.4
UPF3A-209ENST00000492270 IFNA5P01569 189 aa17.56■□□□□ 0.4
UPF3A-209ENST00000492270 CT45A10P0DMU9 189 aa17.56■□□□□ 0.4
UPF3A-209ENST00000492270 PDE6HQ13956 83 aa17.56■□□□□ 0.4
UPF3A-209ENST00000492270 EPPK1P58107 5090 aaKnown RBP17.55■□□□□ 0.4
UPF3A-209ENST00000492270 PLAC8L1A1L4L8 177 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 J3KRW8 73 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 OR10J4P0C629 311 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 HTN1P15515 57 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 GFI1BQ5VTD9 330 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 TMEM256Q8N2U0 113 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 SCGB1C1Q8TD33 95 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 MRPL53Q96EL3 112 aaKnown RBP17.55■□□□□ 0.4
UPF3A-209ENST00000492270 OR51M1Q9H341 326 aa17.55■□□□□ 0.4
UPF3A-209ENST00000492270 ERCC8Q13216 396 aa17.54■□□□□ 0.4
UPF3A-209ENST00000492270 FXYD5Q96DB9 178 aa17.54■□□□□ 0.4
UPF3A-209ENST00000492270 PAXXQ9BUH6 204 aa17.54■□□□□ 0.4
UPF3A-209ENST00000492270 EIF3GO75821 320 aaKnown RBP eCLIP17.53■□□□□ 0.4
UPF3A-209ENST00000492270 NBEAP1P0C6P0 100 aa17.53■□□□□ 0.4
UPF3A-209ENST00000492270 HTN3P15516 51 aa17.53■□□□□ 0.4
UPF3A-209ENST00000492270 TSPOP30536 169 aa17.53■□□□□ 0.4
UPF3A-209ENST00000492270 ICAM4Q14773 271 aa17.53■□□□□ 0.4
UPF3A-209ENST00000492270 ZNF503Q96F45 646 aa17.53■□□□□ 0.4
UPF3A-209ENST00000492270 OR7C2O60412 319 aa17.52■□□□□ 0.4
UPF3A-209ENST00000492270 TAS2R60P59551 318 aa17.52■□□□□ 0.4
UPF3A-209ENST00000492270 DAD1P61803 113 aa17.52■□□□□ 0.4
UPF3A-209ENST00000492270 OXA1LQ15070 435 aa17.52■□□□□ 0.4
UPF3A-209ENST00000492270 Q5BKY6 102 aa17.52■□□□□ 0.4
UPF3A-209ENST00000492270 PHYHIPLQ96FC7 376 aa17.52■□□□□ 0.4
UPF3A-209ENST00000492270 PRELID1Q9Y255 219 aa17.52■□□□□ 0.4
UPF3A-209ENST00000492270 FAM122CQ6P4D5 195 aa17.51■□□□□ 0.39
UPF3A-209ENST00000492270 RNF141Q8WVD5 230 aa17.51■□□□□ 0.39
UPF3A-209ENST00000492270 ODF3Q96PU9 254 aa17.51■□□□□ 0.39
UPF3A-209ENST00000492270 AAMDCQ9H7C9 122 aa17.51■□□□□ 0.39
UPF3A-209ENST00000492270 LEPP41159 167 aa17.5■□□□□ 0.39
UPF3A-209ENST00000492270 NDUFAF3Q9BU61 184 aa17.5■□□□□ 0.39
UPF3A-209ENST00000492270 DNAH6Q9C0G6 4158 aa17.5■□□□□ 0.39
UPF3A-209ENST00000492270 IGKV2-40A0A087WW87 121 aaPredicted RBP17.49■□□□□ 0.39
UPF3A-209ENST00000492270 LYRM9A8MSI8 78 aa17.49■□□□□ 0.39
UPF3A-209ENST00000492270 H7BYZ3 331 aa17.49■□□□□ 0.39
UPF3A-209ENST00000492270 IGKV2D-40P01614 121 aaPredicted RBP17.49■□□□□ 0.39
UPF3A-209ENST00000492270 C16orf74Q96GX8 76 aa17.49■□□□□ 0.39
UPF3A-209ENST00000492270 C20orf144Q9BQM9 153 aa17.49■□□□□ 0.39
UPF3A-209ENST00000492270 AGPAT4-IT1Q9H0P7 198 aa17.49■□□□□ 0.39
UPF3A-209ENST00000492270 TRAV12-3A0A0B4J271 114 aa17.48■□□□□ 0.39
UPF3A-209ENST00000492270 UBE2L3P68036 154 aaKnown RBP17.48■□□□□ 0.39
UPF3A-209ENST00000492270 RNASE8Q8TDE3 154 aaKnown RBP17.48■□□□□ 0.39
UPF3A-209ENST00000492270 GIPP09681 153 aaPredicted RBP17.47■□□□□ 0.39
UPF3A-209ENST00000492270 DEFB130BP0DP73 79 aa17.47■□□□□ 0.39
UPF3A-209ENST00000492270 DEFB130AP0DP74 79 aa17.47■□□□□ 0.39
UPF3A-209ENST00000492270 RAB2AP61019 212 aa17.47■□□□□ 0.39
UPF3A-209ENST00000492270 RGS21Q2M5E4 152 aa17.47■□□□□ 0.39
UPF3A-209ENST00000492270 KHDC3LQ587J8 217 aa17.47■□□□□ 0.39
UPF3A-209ENST00000492270 FAM19A4Q96LR4 140 aa17.47■□□□□ 0.39
UPF3A-209ENST00000492270 AQP10Q96PS8 301 aa17.47■□□□□ 0.39
UPF3A-209ENST00000492270 TMEM263Q8WUH6 116 aaKnown RBP17.46■□□□□ 0.39
UPF3A-209ENST00000492270 VGLL1Q99990 258 aa17.46■□□□□ 0.39
UPF3A-209ENST00000492270 RANP62826 216 aaKnown RBP17.45■□□□□ 0.38
UPF3A-209ENST00000492270 ACOT6Q3I5F7 207 aaPredicted RBP17.45■□□□□ 0.38
UPF3A-209ENST00000492270 C9orf47Q6ZRZ4 202 aa17.45■□□□□ 0.38
UPF3A-209ENST00000492270 HSD17B11Q8NBQ5 300 aa17.45■□□□□ 0.38
UPF3A-209ENST00000492270 LINC00477Q96M19 166 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms