RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CCDC28AQ8IWP9 274 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 TMEM37Q8WXS4 190 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 ZNF503Q96F45 646 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 MGST2Q99735 147 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 UPK3BQ9BT76 320 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 Q9H3A6 140 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 CCDC160A6NGH7 325 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 J3KRW8 73 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 COX7A2P2O60397 106 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 RLN2P04090 185 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 IGLC2P0DOY2 106 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 BTCP35070 178 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 INPP1P49441 399 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 OPCMLQ14982 345 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 ESRGQ1W209 222 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 C4orf46Q504U0 113 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 SAT2Q96F10 170 aaPredicted RBP8.58□□□□□ -1.04
CPSF3-204ENST00000489403 GGACTQ9BVM4 153 aa8.58□□□□□ -1.04
CPSF3-204ENST00000489403 LINC00854A0A1B0GVQ3 168 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 C7orf66A4D0T2 115 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 SNURFLB1AK76 121 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 H3BQ15 152 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 MBPP02686 304 aaPredicted RBP8.57□□□□□ -1.04
CPSF3-204ENST00000489403 SPANXN2Q5MJ10 180 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 C10orf113Q5VZT2 155 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 TRIQKQ629K1 86 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 Q8N1X5 172 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 ODF3Q96PU9 254 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 TMPRSS5Q9H3S3 457 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 GSKIPQ9P0R6 139 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 MRPS16Q9Y3D3 137 aaKnown RBP8.57□□□□□ -1.04
CPSF3-204ENST00000489403 PXMP4Q9Y6I8 212 aa8.57□□□□□ -1.04
CPSF3-204ENST00000489403 TRAV12-3A0A0B4J271 114 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 A0A1W2PPQ1 181 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 NPIPB6E9PJ23 425 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 H3BNG1 76 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 CT45A10P0DMU9 189 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 LEPP41159 167 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 KRTAP10-2P60368 255 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 ZNF431Q8TF32 576 aaPredicted RBP8.56□□□□□ -1.04
CPSF3-204ENST00000489403 MITD1Q8WV92 249 aa8.56□□□□□ -1.04
CPSF3-204ENST00000489403 SDHCQ99643 169 aaPredicted RBP8.56□□□□□ -1.04
CPSF3-204ENST00000489403 RBM38Q9H0Z9 239 aaKnown RBP8.56□□□□□ -1.04
CPSF3-204ENST00000489403 TRAV5A0A0B4J249 113 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 CCSO14618 274 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 BTF3P20290 206 aaKnown RBP8.55□□□□□ -1.04
CPSF3-204ENST00000489403 CAMLGP49069 296 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 DAZ2Q13117 558 aaKnown RBP8.55□□□□□ -1.04
CPSF3-204ENST00000489403 MIC13Q5XKP0 118 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 Q6ZTI0 123 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 NRARPQ7Z6K4 114 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 PYGO2Q9BRQ0 406 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 SCRT2Q9NQ03 307 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 ZNF586Q9NXT0 402 aa8.55□□□□□ -1.04
CPSF3-204ENST00000489403 A0A096LPF7 62 aa8.54□□□□□ -1.04
CPSF3-204ENST00000489403 GUK1Q16774 197 aa8.54□□□□□ -1.04
CPSF3-204ENST00000489403 Q6ZRG5 221 aa8.54□□□□□ -1.04
CPSF3-204ENST00000489403 C11orf72Q8NBR9 251 aa8.54□□□□□ -1.04
CPSF3-204ENST00000489403 VSIG2Q96IQ7 327 aa8.54□□□□□ -1.04
CPSF3-204ENST00000489403 DNAJC4Q9NNZ3 241 aa8.54□□□□□ -1.04
CPSF3-204ENST00000489403 CENPXA8MT69 81 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 L7N2F9 121 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 ZNF253O75346 499 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 VAMP2P63027 116 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 ERCC8Q13216 396 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 OR1L4Q8NGR5 311 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 MRPL53Q96EL3 112 aaKnown RBP8.53□□□□□ -1.04
CPSF3-204ENST00000489403 C20orf85Q9H1P6 137 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 C11orf1Q9H5F2 150 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 GSN-AS1Q9NRJ2 163 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 WDR83OSQ9Y284 106 aa8.53□□□□□ -1.04
CPSF3-204ENST00000489403 LSM5Q9Y4Y9 91 aaKnown RBP8.53□□□□□ -1.04
CPSF3-204ENST00000489403 TRGV2A0A075B6R0 118 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 C7orf71A4D174 169 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 FAM24AA6NFZ4 105 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 M0R3E3 92 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 CST7O76096 145 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 SLC25A5P05141 298 aaKnown RBP8.52□□□□□ -1.05
CPSF3-204ENST00000489403 IL7P13232 177 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 BCAP31P51572 246 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 CAV2P51636 162 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 LINC00315P59091 139 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 BTN1A1Q13410 526 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 RAB31Q13636 194 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 Q6ZRN7 208 aaPredicted RBP8.52□□□□□ -1.05
CPSF3-204ENST00000489403 ZNF680Q8NEM1 530 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 FAM19A4Q96LR4 140 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 C18orf15Q96N68 181 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 PFDN5Q99471 154 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 UQCC1Q9NVA1 299 aa8.52□□□□□ -1.05
CPSF3-204ENST00000489403 TRBV19A0A075B6N1 114 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 TRGV1A0A0A0MS02 117 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 UBE2L5PA0A1B0GUS4 154 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 KLLNB2CW77 178 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 ZNF324O75467 553 aaPredicted RBP8.51□□□□□ -1.05
CPSF3-204ENST00000489403 RPL29P47914 159 aaKnown RBP8.51□□□□□ -1.05
CPSF3-204ENST00000489403 ZNF846Q147U1 533 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 VWC2Q2TAL6 325 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 CNPY1Q3B7I2 92 aa8.51□□□□□ -1.05
CPSF3-204ENST00000489403 LINC00467Q9BRT7 94 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms