RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 MSRB2Q9Y3D2 182 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 C20orf144Q9BQM9 153 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 ZNF492Q9P255 531 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 PRIMA1Q86XR5 153 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 PLXNA3P51805 1871 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 LEPROTO15243 131 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 SPINK8P0C7L1 97 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 ZNF562Q6V9R5 426 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 HAPLN4Q86UW8 402 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 V9GYV3 84 aa14.16□□□□□ -0.14
NPHP4-209ENST00000489180 INSP01308 110 aa14.15□□□□□ -0.14
NPHP4-209ENST00000489180 ZSWIM8A7E2V4 1837 aa14.15□□□□□ -0.14
NPHP4-209ENST00000489180 MYMXA0A1B0GTQ4 84 aa14.15□□□□□ -0.14
NPHP4-209ENST00000489180 GAGE2AQ6NT46 116 aa14.15□□□□□ -0.14
NPHP4-209ENST00000489180 FANCMQ8IYD8 2048 aa14.15□□□□□ -0.14
NPHP4-209ENST00000489180 PRR30Q53SZ7 412 aaPredicted RBP14.15□□□□□ -0.14
NPHP4-209ENST00000489180 DAZ1Q9NQZ3 744 aaKnown RBP14.15□□□□□ -0.14
NPHP4-209ENST00000489180 KLK9Q9UKQ9 250 aa14.15□□□□□ -0.14
NPHP4-209ENST00000489180 MYLKQ15746 1914 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 DSCR9P59020 149 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 PDE6HQ13956 83 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 FAM104BQ5XKR9 115 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 C17orf58Q2M2W7 97 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 PROK2Q9HC23 129 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 LY6G5BQ8NDX9 201 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 PRSS46E5RG02 174 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 EDA2RQ9HAV5 297 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 TPSG1Q9NRR2 321 aa14.14□□□□□ -0.15
NPHP4-209ENST00000489180 TRBV19A0A075B6N1 114 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 IGHV1-24A0A0C4DH33 117 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 E9PQ18 207 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 G3V318 75 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 LMO1P25800 156 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 IGHV3-16A0A0C4DH30 117 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 DEFB131AP59861 70 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 Q6ZS92 163 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 SLC25A16P16260 332 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 INTS1Q8N201 2190 aaKnown RBP14.13□□□□□ -0.15
NPHP4-209ENST00000489180 DEFB130BP0DP73 79 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 DEFB130AP0DP74 79 aa14.13□□□□□ -0.15
NPHP4-209ENST00000489180 IGHV2-70P01814 119 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 NPSP0C0P6 89 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 MRPL51Q4U2R6 128 aaKnown RBP14.12□□□□□ -0.15
NPHP4-209ENST00000489180 C10orf91Q5T1B1 145 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 ZNF833PQ6ZTB9 187 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 C2orf66Q6UXQ4 117 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 CFHR3Q02985 330 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 SPINK13Q1W4C9 94 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 NEGR1Q7Z3B1 354 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 TRPM7Q96QT4 1865 aa14.12□□□□□ -0.15
NPHP4-209ENST00000489180 CNOT1A5YKK6 2376 aaKnown RBP14.12□□□□□ -0.15
NPHP4-209ENST00000489180 IGLC2P0DOY2 106 aa14.11□□□□□ -0.15
NPHP4-209ENST00000489180 IGLC3P0DOY3 106 aa14.11□□□□□ -0.15
NPHP4-209ENST00000489180 YLPM1P49750 1951 aaKnown RBP14.11□□□□□ -0.15
NPHP4-209ENST00000489180 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.11□□□□□ -0.15
NPHP4-209ENST00000489180 TRPT1Q86TN4 253 aaKnown RBP14.11□□□□□ -0.15
NPHP4-209ENST00000489180 SRSF8Q9BRL6 282 aaKnown RBP14.11□□□□□ -0.15
NPHP4-209ENST00000489180 HEATR1Q9H583 2144 aaKnown RBP14.11□□□□□ -0.15
NPHP4-209ENST00000489180 SPTBN2O15020 2390 aa14.11□□□□□ -0.15
NPHP4-209ENST00000489180 WIPF3A6NGB9 483 aa14.11□□□□□ -0.15
NPHP4-209ENST00000489180 INS-IGF2F8WCM5 200 aa14.11□□□□□ -0.15
NPHP4-209ENST00000489180 ZNF134P52741 427 aa14.11□□□□□ -0.15
NPHP4-209ENST00000489180 SMIM27A0A1W2PRY6 76 aa14.1□□□□□ -0.15
NPHP4-209ENST00000489180 TCF15Q12870 199 aa14.1□□□□□ -0.15
NPHP4-209ENST00000489180 DIAPH2-AS1Q14236 149 aa14.1□□□□□ -0.15
NPHP4-209ENST00000489180 Q8N8P6 123 aa14.1□□□□□ -0.15
NPHP4-209ENST00000489180 IGHV2-5P01817 119 aa14.1□□□□□ -0.15
NPHP4-209ENST00000489180 IGLL1P15814 213 aa14.1□□□□□ -0.15
NPHP4-209ENST00000489180 RSPO1Q2MKA7 263 aaPredicted RBP14.1□□□□□ -0.15
NPHP4-209ENST00000489180 MAPK1IP1LQ8NDC0 245 aa14.1□□□□□ -0.15
NPHP4-209ENST00000489180 FAM110DQ8TAY7 271 aaPredicted RBP14.1□□□□□ -0.15
NPHP4-209ENST00000489180 CMC4P56277 68 aaPredicted RBP14.09□□□□□ -0.15
NPHP4-209ENST00000489180 WT1-ASQ06250 92 aa14.09□□□□□ -0.15
NPHP4-209ENST00000489180 XCL2Q9UBD3 114 aa14.09□□□□□ -0.15
NPHP4-209ENST00000489180 EP300Q09472 2414 aaPredicted RBP14.09□□□□□ -0.15
NPHP4-209ENST00000489180 ETV2O00321 342 aaPredicted RBP14.09□□□□□ -0.15
NPHP4-209ENST00000489180 MMP23AO75900 390 aa14.09□□□□□ -0.15
NPHP4-209ENST00000489180 MYO7BQ6PIF6 2116 aa14.09□□□□□ -0.15
NPHP4-209ENST00000489180 YPEL3P61236 119 aaPredicted RBP14.09□□□□□ -0.15
NPHP4-209ENST00000489180 CT83Q5H943 113 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 GAGE12JA6NER3 117 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 GAGE1Q13065 139 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 GAGE4Q13068 117 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 GAGE5Q13069 117 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 TEX36Q5VZQ5 186 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 TRAV12-2A0A075B6T6 113 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 MAJINQ3KP22 176 aa14.08□□□□□ -0.16
NPHP4-209ENST00000489180 C9orf118A6NHY6 69 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 C8orf86Q6ZUL3 223 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 ZC2HC1AQ96GY0 325 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 IGHV3-38A0A0C4DH36 116 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 C15orf65H3BRN8 121 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 VWC2Q2TAL6 325 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 SIGLEC8Q9NYZ4 499 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 DOCK11Q5JSL3 2073 aa14.07□□□□□ -0.16
NPHP4-209ENST00000489180 PRR25Q96S07 402 aa14.06□□□□□ -0.16
NPHP4-209ENST00000489180 THSD7BQ9C0I4 1608 aa14.06□□□□□ -0.16
NPHP4-209ENST00000489180 LOXP28300 417 aaPredicted RBP14.06□□□□□ -0.16
NPHP4-209ENST00000489180 ANXA2RQ3ZCQ2 193 aa14.06□□□□□ -0.16
NPHP4-209ENST00000489180 UBE2DNLQ8IWF7 75 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms