RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 MAP1LC3B2A6NCE7 125 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 FHITP49789 147 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 RANP62826 216 aaKnown RBP7.64□□□□□ -1.19
SKA1-204ENST00000488454 ZNF726P1Q15940 193 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 ACTL10Q5JWF8 245 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 LYPD1Q8N2G4 141 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 RNF182Q8N6D2 247 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 MBD3L1Q8WWY6 194 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 ZNF503Q96F45 646 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 MAP1LC3BQ9GZQ8 125 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 WFDC10AQ9H1F0 79 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 PRELID1Q9Y255 219 aa7.64□□□□□ -1.19
SKA1-204ENST00000488454 LOC102724200A0A096LPH7 203 aaPredicted RBP7.63□□□□□ -1.19
SKA1-204ENST00000488454 KNCNA6PVL3 124 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 ZNF705EA8MWA4 302 aaPredicted RBP7.63□□□□□ -1.19
SKA1-204ENST00000488454 A8MZ25 164 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 SLC17A3O00476 420 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 NDUFB4O95168 129 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 CSN1S1P47710 185 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 FGF8P55075 233 aaPredicted RBP7.63□□□□□ -1.19
SKA1-204ENST00000488454 ICAM4Q14773 271 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 ALKAL2Q6UX46 152 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 FOXI2Q6ZQN5 318 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 SSX7Q7RTT5 188 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 EXOC3-AS1Q8N2X6 119 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 RPUSD4Q96CM3 377 aaKnown RBP7.63□□□□□ -1.19
SKA1-204ENST00000488454 C20orf173Q96LM9 149 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 NBEAL1Q6ZS30 2694 aa7.63□□□□□ -1.19
SKA1-204ENST00000488454 PGPA6NDG6 321 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 DUSP14O95147 198 aaKnown RBP7.62□□□□□ -1.19
SKA1-204ENST00000488454 HBE1P02100 147 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 HLA-DMBP28068 263 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 BLOC1S1P78537 153 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 ZNF124Q15973 351 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 LCE3BQ5TA77 95 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 OR4B1Q8NGF8 309 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 OR10J6PQ8NGY7 276 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 CMTM2Q8TAZ6 248 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 RXFP4Q8TDU9 374 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 MRPL53Q96EL3 112 aaKnown RBP7.62□□□□□ -1.19
SKA1-204ENST00000488454 Q9H3A6 140 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 SAV1Q9H4B6 383 aaPredicted RBP7.62□□□□□ -1.19
SKA1-204ENST00000488454 OTORQ9NRC9 128 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 PPP1R14DQ9NXH3 145 aa7.62□□□□□ -1.19
SKA1-204ENST00000488454 NOTCH1P46531 2555 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 A0A1B0GV50 99 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 ZNF705FA8MVS1 300 aaPredicted RBP7.61□□□□□ -1.19
SKA1-204ENST00000488454 IFNA7P01567 189 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 FRMD6-AS1P0C7T7 363 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 HLA-DRB4P13762 266 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 RPL35AP18077 110 aaKnown RBP7.61□□□□□ -1.19
SKA1-204ENST00000488454 PPT1P50897 306 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 APOC4P55056 127 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 NUTF2P61970 127 aaKnown RBP7.61□□□□□ -1.19
SKA1-204ENST00000488454 TEX261Q6UWH6 196 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 SUN5Q8TC36 379 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 NKX6-2Q9C056 277 aaPredicted RBP7.61□□□□□ -1.19
SKA1-204ENST00000488454 TMPRSS5Q9H3S3 457 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 HLA-DRB4X5D2U9 266 aa7.61□□□□□ -1.19
SKA1-204ENST00000488454 TRAV1-1A0A0B4J248 108 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 A0A0J9YX75 114 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 A0A1W2PRE2 83 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 RBMY1BA6NDE4 496 aaKnown RBP7.6□□□□□ -1.19
SKA1-204ENST00000488454 RBMY1EA6NEQ0 496 aaKnown RBP7.6□□□□□ -1.19
SKA1-204ENST00000488454 F6UB75 175 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 H3BMM0 161 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 M0R3E3 92 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 IGKV3-20P01619 116 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 RBMY1DP0C7P1 496 aaKnown RBP7.6□□□□□ -1.19
SKA1-204ENST00000488454 UBE2G2P60604 165 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 SUMO1P63165 101 aaKnown RBP7.6□□□□□ -1.19
SKA1-204ENST00000488454 HIST1H1AQ02539 215 aaPredicted RBP7.6□□□□□ -1.19
SKA1-204ENST00000488454 CST9LP1Q5W188 147 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 MORN3Q6PF18 240 aaPredicted RBP7.6□□□□□ -1.19
SKA1-204ENST00000488454 OR8A1Q8NGG7 326 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 CSTL1Q9H114 145 aa7.6□□□□□ -1.19
SKA1-204ENST00000488454 KIR2DL5BA0A0G2JN68 375 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 KIR2DL5BA0A0G2JPC4 375 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 UBE2CO00762 179 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 SLC25A5P05141 298 aaKnown RBP7.59□□□□□ -1.19
SKA1-204ENST00000488454 ZNF705DP0CH99 300 aaPredicted RBP7.59□□□□□ -1.19
SKA1-204ENST00000488454 ZNF705BP0CI00 300 aaPredicted RBP7.59□□□□□ -1.19
SKA1-204ENST00000488454 CNN1P51911 297 aaKnown RBP7.59□□□□□ -1.19
SKA1-204ENST00000488454 DEFB1P60022 68 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 GDF5OSQ5U4N7 250 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 TRPT1Q86TN4 253 aaKnown RBP7.59□□□□□ -1.19
SKA1-204ENST00000488454 KIR2DL5AQ8N109 375 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 ARL6IP6Q8N6S5 226 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 ZNF680Q8NEM1 530 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 KIR2DL5BQ8NHK3 375 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 RPH3ALQ9UNE2 315 aa7.59□□□□□ -1.19
SKA1-204ENST00000488454 PRAC2D3DTV9 90 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 F6UZH7 168 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 K7EQM0 130 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 IFNA1P01562 189 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 LINC00322Q6ZN03 302 aaPredicted RBP7.58□□□□□ -1.2
SKA1-204ENST00000488454 C5orf17Q8NAS9 161 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 LINC00477Q96M19 166 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 CLUHP3Q96NS8 147 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 MANBALQ9NQG1 85 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms