RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 IFNA1P01562 189 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 IGLV3-27P01718 113 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 C1QCP02747 245 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 PRH1P02810 166 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 OR4A8P0C604 315 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 OR5G3P0C626 314 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 OR10J4P0C629 311 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 OR13C7P0DN81 318 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CCL2P13500 99 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CMPK1P30085 196 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 GABRA3P34903 492 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 AKR1C3P42330 323 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 GABRA2P47869 451 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CDC34P49427 236 aaPredicted RBP1.88□□□□□ -2.11
USP48-209ENST00000487880 MP68P56378 58 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 YPEL3P61236 119 aaPredicted RBP1.88□□□□□ -2.11
USP48-209ENST00000487880 ERVS71-1P61550 626 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 LCN6P62502 163 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 BTN3A2P78410 334 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 Q0VG73 95 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 EIF3IQ13347 325 aaKnown RBP1.88□□□□□ -2.11
USP48-209ENST00000487880 PMCHL1Q16048 86 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 MPV17LQ2QL34 196 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 PLPPR5Q32ZL2 321 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 HES3Q5TGS1 186 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 SDHAF4Q5VUM1 108 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 AADACL3Q5VUY0 350 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 MRPL54Q6P161 138 aaKnown RBP1.88□□□□□ -2.11
USP48-209ENST00000487880 CYP2G1PQ6ZSU1 146 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 DEFB128Q7Z7B8 93 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 LHFPL1Q86WI0 220 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 C1orf174Q8IYL3 243 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 OR5A2Q8NGI9 324 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CLDND2Q8NHS1 167 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 ZNF563Q8TA94 476 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 TMEM239Q8WW34 195 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 SLC35G5Q96KT7 338 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 GPX7Q96SL4 187 aaPredicted RBP1.88□□□□□ -2.11
USP48-209ENST00000487880 AICDAQ9GZX7 198 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CXCL16Q9H2A7 254 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CKLFQ9UBR5 152 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 SLC22A13Q9Y226 551 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 MED31Q9Y3C7 131 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 RBM7Q9Y580 266 aaKnown RBP1.88□□□□□ -2.11
USP48-209ENST00000487880 DOCK4Q8N1I0 1966 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 PLXNA3P51805 1871 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 TRPM7Q96QT4 1865 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CCDC88CQ9P219 2028 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 GREB1Q4ZG55 1949 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 IGKV1-12A0A0C4DH73 117 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 A0A1B0GW15 77 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 DUXBA0A1W2PPF3 345 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 A0A1W2PRS3 328 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 ZNF727A8MUV8 499 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 ZNF705FA8MVS1 300 aaPredicted RBP1.87□□□□□ -2.11
USP48-209ENST00000487880 OR11H12B2RN74 326 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 C17orf112F2Z3M2 114 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 H7BYZ3 331 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 J3QR89 54 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 CDC42EP2O14613 210 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 MGAMO43451 1857 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 PITX3O75364 302 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 NDUFB2O95178 105 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 IGKV1D-12P01611 117 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 HLA-DRB1P01911 266 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 ISG15P05161 165 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 CTSDP07339 412 aaPredicted RBP1.87□□□□□ -2.11
USP48-209ENST00000487880 ZNF705DP0CH99 300 aaPredicted RBP1.87□□□□□ -2.11
USP48-209ENST00000487880 ZNF705BP0CI00 300 aaPredicted RBP1.87□□□□□ -2.11
USP48-209ENST00000487880 P0DMU3 169 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 FAM231AP0DMU4 169 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 FAM231CP0DMU5 169 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 IGLC2P0DOY2 106 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 IGLC3P0DOY3 106 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 BCL2P10415 239 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 IL9P15248 144 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 AKR1C4P17516 323 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 REG1BP48304 166 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 FXYD6P3P58550 94 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 BTG2P78543 158 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 SERF2P84101 59 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 SAMD13Q5VXD3 122 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 AGTRAPQ6RW13 159 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 UBR3Q6ZT12 1888 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 GTF2H5Q6ZYL4 71 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 MUC15Q8N387 334 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 OR11H1Q8NG94 326 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 OR5A1Q8NGJ0 315 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 OR2T10Q8NGZ9 312 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 OR11H2Q8NH07 326 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 OR4K13Q8NH42 304 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 FNDC9Q8TBE3 224 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 MBD3L1Q8WWY6 194 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 PSMF1Q92530 271 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 FGF13Q92913 245 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 TSPAN32Q96QS1 320 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 TBX5Q99593 518 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 TXNDC17Q9BRA2 123 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 PSMG3Q9BT73 122 aaPredicted RBP1.87□□□□□ -2.11
USP48-209ENST00000487880 OR51I2Q9H344 312 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms