RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ZNF785A8K8V0 405 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 DIRC3C9JPN6 131 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 M0R3E3 92 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 LTAP01374 205 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 IGLV2-11P01706 119 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 CDX1P47902 265 aaPredicted RBP10.82□□□□□ -0.68
CUX1-209ENST00000487284 OR5I1Q13606 314 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 GOLT1AQ6ZVE7 132 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 Q86TA4 180 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 TMEM75Q8N9X5 138 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 PYGO2Q9BRQ0 406 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 SLC50A1Q9BRV3 221 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 MLST8Q9BVC4 326 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 COL6A5A8TX70 2615 aa10.81□□□□□ -0.68
CUX1-209ENST00000487284 SERTM2A0A1B0GWG4 89 aa10.81□□□□□ -0.68
CUX1-209ENST00000487284 K7EMT4 169 aa10.81□□□□□ -0.68
CUX1-209ENST00000487284 K7EQM0 130 aa10.81□□□□□ -0.68
CUX1-209ENST00000487284 S100PP25815 95 aa10.81□□□□□ -0.68
CUX1-209ENST00000487284 NHLRC2Q8NBF2 726 aa10.81□□□□□ -0.68
CUX1-209ENST00000487284 DAZ1Q9NQZ3 744 aaKnown RBP10.81□□□□□ -0.68
CUX1-209ENST00000487284 A0A1W2PS18 150 aa10.8□□□□□ -0.68
CUX1-209ENST00000487284 MGST1P10620 155 aaKnown RBP10.8□□□□□ -0.68
CUX1-209ENST00000487284 ERVFC1-1P60608 527 aa10.8□□□□□ -0.68
CUX1-209ENST00000487284 FAM106AQ4KMX7 169 aa10.8□□□□□ -0.68
CUX1-209ENST00000487284 KLHL30-AS1Q8NEE0 82 aa10.8□□□□□ -0.68
CUX1-209ENST00000487284 GRAMD2BQ96HH9 432 aa10.8□□□□□ -0.68
CUX1-209ENST00000487284 V9GYV3 84 aa10.8□□□□□ -0.68
CUX1-209ENST00000487284 STAB1Q9NY15 2570 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 TRAV8-1A0A0A6YYK1 113 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 IGHV7-4-1A0A0J9YVY3 117 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 A0A1W2PRX2 142 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 ZNF320A2RRD8 509 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 CSN1S1P47710 185 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 PSG3Q16557 428 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 DEFB136Q30KP8 78 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 KCNIP4Q6PIL6 250 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 FAM231DQ6ZW35 169 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 FAM210BQ96KR6 192 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 SGK494Q96LW2 274 aa10.79□□□□□ -0.68
CUX1-209ENST00000487284 TSSC4Q9Y5U2 329 aaPredicted RBP10.79□□□□□ -0.68
CUX1-209ENST00000487284 FLI1Q01543 452 aaPredicted RBP10.78□□□□□ -0.68
CUX1-209ENST00000487284 RPEL1Q2QD12 228 aa10.78□□□□□ -0.68
CUX1-209ENST00000487284 IBA57Q5T440 356 aaKnown RBP10.78□□□□□ -0.68
CUX1-209ENST00000487284 C8orf86Q6ZUL3 223 aa10.78□□□□□ -0.68
CUX1-209ENST00000487284 TMEM183AQ8IXX5 376 aa10.78□□□□□ -0.68
CUX1-209ENST00000487284 C4orf3Q8WVX3 66 aa10.78□□□□□ -0.68
CUX1-209ENST00000487284 RNASE7Q9H1E1 156 aaKnown RBP10.78□□□□□ -0.68
CUX1-209ENST00000487284 IL36BQ9NZH7 164 aa10.78□□□□□ -0.68
CUX1-209ENST00000487284 UFC1Q9Y3C8 167 aa10.78□□□□□ -0.68
CUX1-209ENST00000487284 IGHV4OR15-8A0A075B7B6 117 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 A0A087WW49 117 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 FBLL1A6NHQ2 334 aaKnown RBP10.77□□□□□ -0.68
CUX1-209ENST00000487284 ADARB2-AS1A8MUL3 147 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 A8MWP6 167 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 CHEK1O14757 476 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 TM4SF20Q53R12 229 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 REC114Q7Z4M0 266 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 C1QL4Q86Z23 238 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 MRPL53Q96EL3 112 aaKnown RBP10.77□□□□□ -0.68
CUX1-209ENST00000487284 BIN3Q9NQY0 253 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 ZNF492Q9P255 531 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 SMPXQ9UHP9 88 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 PSG8Q9UQ74 426 aa10.77□□□□□ -0.68
CUX1-209ENST00000487284 TRAV8-2A0A0B4J237 113 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 A0A1W2PPQ1 181 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 LGALS9O00182 355 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 HLA-DMBP28068 263 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 PRNTQ86SH4 94 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 TMEM158Q8WZ71 300 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 BTF3L4Q96K17 158 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 DUX3Q96PT4 197 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 RHPN1-AS1Q9BWJ2 59 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 MLXQ9UH92 298 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 ZFP30Q9Y2G7 519 aa10.77□□□□□ -0.69
CUX1-209ENST00000487284 TRAV9-1A0A075B6T8 112 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 TMEM213A2RRL7 107 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 C1orf196B1AJZ1 125 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 TYMSP04818 313 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 RPS10P46783 165 aaKnown RBP10.76□□□□□ -0.69
CUX1-209ENST00000487284 NSUN5P1Q3KNT7 163 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 IGFL4Q6B9Z1 124 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 LCN12Q6JVE5 192 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 OR11H1Q8NG94 326 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 CLEC5AQ9NY25 188 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 WNK1Q9H4A3 2382 aa10.76□□□□□ -0.69
CUX1-209ENST00000487284 IGKV2-40A0A087WW87 121 aaPredicted RBP10.75□□□□□ -0.69
CUX1-209ENST00000487284 C19orf71A6NCJ1 209 aa10.75□□□□□ -0.69
CUX1-209ENST00000487284 IGKV2D-40P01614 121 aaPredicted RBP10.75□□□□□ -0.69
CUX1-209ENST00000487284 FAM3BP58499 235 aaPredicted RBP10.75□□□□□ -0.69
CUX1-209ENST00000487284 NUDT10Q8NFP7 164 aa10.75□□□□□ -0.69
CUX1-209ENST00000487284 NUDT11Q96G61 164 aa10.75□□□□□ -0.69
CUX1-209ENST00000487284 CITED1Q99966 193 aa10.75□□□□□ -0.69
CUX1-209ENST00000487284 RBAKDNA6NC62 111 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 SOCS3O14543 225 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 HOXD3P31249 432 aaPredicted RBP10.74□□□□□ -0.69
CUX1-209ENST00000487284 BMI1P35226 326 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 RAB5BP61020 215 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 PRR27Q6MZM9 219 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 NDUFA11Q86Y39 141 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms