RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 HAPLN4Q86UW8 402 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 LY6G6EA0A0G2JKS1 128 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 ZNF562Q6V9R5 426 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 FAM231DQ6ZW35 169 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 SSC4DQ8WTU2 575 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 C1orf159Q96HA4 380 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 RHPN1-AS1Q9BWJ2 59 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 U3KQA8 63 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 PSCAO43653 123 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 FANCMQ8IYD8 2048 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 SMIM27A0A1W2PRY6 76 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 CFHR2P36980 270 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 Q6ZWC4 215 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 C8orf49Q96NF6 230 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 OCIAD2Q56VL3 154 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 CMC4P56277 68 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-210ENST00000487017 TRBV19A0A075B6N1 114 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 B4DSR2 109 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 RPL36AP83881 106 aaKnown RBP13.23□□□□□ -0.29
COL7A1-210ENST00000487017 FAM104BQ5XKR9 115 aa13.23□□□□□ -0.29
COL7A1-210ENST00000487017 RPL36ALQ969Q0 106 aaKnown RBP13.23□□□□□ -0.29
COL7A1-210ENST00000487017 LY6HO94772 140 aa13.22□□□□□ -0.29
COL7A1-210ENST00000487017 RASL10AQ92737 203 aa13.22□□□□□ -0.29
COL7A1-210ENST00000487017 C15orf65H3BRN8 121 aa13.22□□□□□ -0.29
COL7A1-210ENST00000487017 NDUFB8O95169 186 aa13.22□□□□□ -0.29
COL7A1-210ENST00000487017 ZNF114Q8NC26 417 aa13.22□□□□□ -0.29
COL7A1-210ENST00000487017 SAA4P35542 130 aa13.22□□□□□ -0.29
COL7A1-210ENST00000487017 TRAV13-1A0A0B4J241 112 aa13.21□□□□□ -0.29
COL7A1-210ENST00000487017 SLAQ13239 276 aa13.21□□□□□ -0.29
COL7A1-210ENST00000487017 A0A087WWL8 130 aa13.21□□□□□ -0.3
COL7A1-210ENST00000487017 IGLC2P0DOY2 106 aa13.21□□□□□ -0.3
COL7A1-210ENST00000487017 IGLC3P0DOY3 106 aa13.21□□□□□ -0.3
COL7A1-210ENST00000487017 C6orf226Q5I0X4 101 aa13.21□□□□□ -0.3
COL7A1-210ENST00000487017 FAM110DQ8TAY7 271 aaPredicted RBP13.21□□□□□ -0.3
COL7A1-210ENST00000487017 FER1L5A0AVI2 2057 aa13.21□□□□□ -0.3
COL7A1-210ENST00000487017 HEATR5AQ86XA9 2040 aa13.2□□□□□ -0.3
COL7A1-210ENST00000487017 DAZ1Q9NQZ3 744 aaKnown RBP13.2□□□□□ -0.3
COL7A1-210ENST00000487017 HELZP42694 1942 aaKnown RBP13.2□□□□□ -0.3
COL7A1-210ENST00000487017 LGALS1P09382 135 aaKnown RBP13.2□□□□□ -0.3
COL7A1-210ENST00000487017 DUX4L9Q6RFH8 374 aaPredicted RBP13.2□□□□□ -0.3
COL7A1-210ENST00000487017 IL17RELQ6ZVW7 336 aa13.2□□□□□ -0.3
COL7A1-210ENST00000487017 PIP4P2Q8N4L2 257 aa13.2□□□□□ -0.3
COL7A1-210ENST00000487017 LYPD6BQ8NI32 183 aa13.2□□□□□ -0.3
COL7A1-210ENST00000487017 C2orf82Q6UX34 121 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 C11orf52Q96A22 123 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 TRAV8-3A0A0A6YYJ7 113 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 TICRRQ7Z2Z1 1910 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 LCNL1Q6ZST4 164 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 TIMM21Q9BVV7 248 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 GVINP1Q7Z2Y8 2422 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 ADAMTSL5Q6ZMM2 481 aa13.19□□□□□ -0.3
COL7A1-210ENST00000487017 HEATR1Q9H583 2144 aaKnown RBP13.18□□□□□ -0.3
COL7A1-210ENST00000487017 F8WEM9 126 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 GNLYP22749 145 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 LINC00311Q8N616 119 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 Q8N8P6 123 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 TMEM14CQ9P0S9 112 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 BPESC1Q9GZL8 116 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 IGHV1-24A0A0C4DH33 117 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 CITED2Q99967 270 aaPredicted RBP13.18□□□□□ -0.3
COL7A1-210ENST00000487017 OVOL3O00110 214 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 ATP6V0E1O15342 81 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 KLHL30-AS1Q8NEE0 82 aa13.18□□□□□ -0.3
COL7A1-210ENST00000487017 DEFB130BP0DP73 79 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 DEFB130AP0DP74 79 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 ZNF134P52741 427 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 WT1-ASQ06250 92 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 TEX36Q5VZQ5 186 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 VOPP1Q96AW1 172 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 MYMXA0A1B0GTQ4 84 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 SPXQ9BT56 116 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 LY6G5BQ8NDX9 201 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 H3BRN7 92 aa13.17□□□□□ -0.3
COL7A1-210ENST00000487017 PLXND1Q9Y4D7 1925 aa13.16□□□□□ -0.3
COL7A1-210ENST00000487017 LOXP28300 417 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-210ENST00000487017 UBE2E1P51965 193 aa13.16□□□□□ -0.3
COL7A1-210ENST00000487017 MRPL51Q4U2R6 128 aaKnown RBP13.16□□□□□ -0.3
COL7A1-210ENST00000487017 TRPT1Q86TN4 253 aaKnown RBP13.16□□□□□ -0.3
COL7A1-210ENST00000487017 IGLV1-44P01699 117 aa13.16□□□□□ -0.3
COL7A1-210ENST00000487017 SSBP2P81877 361 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-210ENST00000487017 PI4KAP42356 2102 aa13.16□□□□□ -0.3
COL7A1-210ENST00000487017 EDA2RQ9HAV5 297 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 VWC2LB2RUY7 222 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 SPINK8P0C7L1 97 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 DTX1Q86Y01 620 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 ANAPC1Q9H1A4 1944 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 THAP8Q8NA92 274 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 DOPEY2Q9Y3R5 2298 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 LEPROTO15243 131 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 IGLL1P15814 213 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 PRR25Q96S07 402 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 CITED1Q99966 193 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 TP53TG1Q9Y2A0 90 aa13.15□□□□□ -0.3
COL7A1-210ENST00000487017 INTS1Q8N201 2190 aaKnown RBP13.14□□□□□ -0.31
COL7A1-210ENST00000487017 C2orf66Q6UXQ4 117 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 MMP23AO75900 390 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 GAGE2AQ6NT46 116 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 Q8NFD4 153 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 FXYD5Q96DB9 178 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 PRIMA1Q86XR5 153 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms