RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 BOLA2-SMG1P6H3BVE0 249 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 M0R3E3 92 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 NBEAP1P0C6P0 100 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 RBMY1A1P0DJD3 496 aaKnown RBP10.68□□□□□ -0.7
USP4-212ENST00000486549 RBMY1CP0DJD4 496 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 M6PRP20645 277 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 TAS2R45P59539 299 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 UBE2L3P68036 154 aaKnown RBP10.68□□□□□ -0.7
USP4-212ENST00000486549 PDE6HQ13956 83 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 RBMY1FQ15415 496 aaKnown RBP10.68□□□□□ -0.7
USP4-212ENST00000486549 KHDC3LQ587J8 217 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 BAP18Q8IXM2 172 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 OR10G4Q8NGN3 311 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 OR10G9Q8NGN4 311 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 OR10G7Q8NGN6 311 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 OR10J6PQ8NGY7 276 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 RNF141Q8WVD5 230 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 ZNF503Q96F45 646 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 SH3BGRL3Q9H299 93 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 AAMDCQ9H7C9 122 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 GOLT1BQ9Y3E0 138 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 TRAV12-2A0A075B6T6 113 aa10.67□□□□□ -0.7
USP4-212ENST00000486549 HMGB3O15347 200 aaKnown RBP10.67□□□□□ -0.7
USP4-212ENST00000486549 INSP01308 110 aa10.67□□□□□ -0.7
USP4-212ENST00000486549 ICAM4Q14773 271 aa10.67□□□□□ -0.7
USP4-212ENST00000486549 ZNF705AQ6ZN79 300 aaPredicted RBP10.67□□□□□ -0.7
USP4-212ENST00000486549 PHYHIPLQ96FC7 376 aa10.67□□□□□ -0.7
USP4-212ENST00000486549 IGF2BP2-AS1Q96M15 143 aa10.67□□□□□ -0.7
USP4-212ENST00000486549 PSMG3Q9BT73 122 aaPredicted RBP10.67□□□□□ -0.7
USP4-212ENST00000486549 TMEM208Q9BTX3 173 aa10.67□□□□□ -0.7
USP4-212ENST00000486549 TENM2Q9NT68 2774 aa10.66□□□□□ -0.7
USP4-212ENST00000486549 AMBPP02760 352 aa10.66□□□□□ -0.7
USP4-212ENST00000486549 NANOS2P60321 138 aaKnown RBP10.66□□□□□ -0.7
USP4-212ENST00000486549 C1orf158Q8N1D5 194 aa10.66□□□□□ -0.7
USP4-212ENST00000486549 OR2G3Q8NGZ4 309 aa10.66□□□□□ -0.7
USP4-212ENST00000486549 C11orf45Q8TAV5 145 aa10.66□□□□□ -0.7
USP4-212ENST00000486549 PRELID1Q9Y255 219 aa10.66□□□□□ -0.7
USP4-212ENST00000486549 CRXO43186 299 aaPredicted RBP10.65□□□□□ -0.7
USP4-212ENST00000486549 CDC34P49427 236 aaPredicted RBP10.65□□□□□ -0.7
USP4-212ENST00000486549 GNPNAT1Q96EK6 184 aaPredicted RBP10.65□□□□□ -0.7
USP4-212ENST00000486549 MRPL53Q96EL3 112 aaKnown RBP10.65□□□□□ -0.7
USP4-212ENST00000486549 NPIPB6E9PJ23 425 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 J3KRW8 73 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 HBE1P02100 147 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 CDKN1BP46527 198 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 EMP1P54849 157 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 RANP62826 216 aaKnown RBP10.64□□□□□ -0.71
USP4-212ENST00000486549 SERF2P84101 59 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 ERCC8Q13216 396 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 RPP25LQ8N5L8 163 aaKnown RBP10.64□□□□□ -0.71
USP4-212ENST00000486549 OR11H4Q8NGC9 324 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 NEU1Q99519 415 aa10.64□□□□□ -0.71
USP4-212ENST00000486549 IGKV2-40A0A087WW87 121 aaPredicted RBP10.63□□□□□ -0.71
USP4-212ENST00000486549 TAAR5O14804 337 aa10.63□□□□□ -0.71
USP4-212ENST00000486549 IGKV2D-40P01614 121 aaPredicted RBP10.63□□□□□ -0.71
USP4-212ENST00000486549 MBP02144 154 aa10.63□□□□□ -0.71
USP4-212ENST00000486549 Q6ZNX1 250 aa10.63□□□□□ -0.71
USP4-212ENST00000486549 PQLC2Q6ZP29 291 aa10.63□□□□□ -0.71
USP4-212ENST00000486549 Q9H3A6 140 aa10.63□□□□□ -0.71
USP4-212ENST00000486549 CELA1Q9UNI1 258 aa10.63□□□□□ -0.71
USP4-212ENST00000486549 hCG_2014768A0A024R1R8 64 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 LOC102723971A0A1B0GUV8 181 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 NUPR2A6NF83 97 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 SMIM9A6NGZ8 99 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 ARL14EPLP0DKL9 152 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 CT45A10P0DMU9 189 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 TSPOP30536 169 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 ZNF345Q14585 488 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 KIR3DS1Q14943 382 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 RRN3P1Q2M238 152 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 KCNRGQ8N5I3 272 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 PHLDA1Q8WV24 401 aaPredicted RBP10.62□□□□□ -0.71
USP4-212ENST00000486549 RAB24Q969Q5 203 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 ARPC5LQ9BPX5 153 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 CYTL1Q9NRR1 136 aa10.62□□□□□ -0.71
USP4-212ENST00000486549 HMSDA8MTL9 139 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 ZNF705GA8MUZ8 300 aaPredicted RBP10.61□□□□□ -0.71
USP4-212ENST00000486549 PRM2P04554 102 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 STAG3L2P0CL84 134 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 STAG3L3P0CL85 134 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 LEPP41159 167 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 CSN1S1P47710 185 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 ZNF767PQ75MW2 155 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 ST6GAL2Q96JF0 529 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 HYLS1Q96M11 299 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 LINC01587Q99440 93 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 ACTR3CQ9C0K3 210 aaPredicted RBP10.61□□□□□ -0.71
USP4-212ENST00000486549 RPH3ALQ9UNE2 315 aa10.61□□□□□ -0.71
USP4-212ENST00000486549 DYNC2H1Q8NCM8 4307 aaKnown RBP10.6□□□□□ -0.71
USP4-212ENST00000486549 TMEM189A5PLL7 270 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 HTN1P15515 57 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 AKR1C8PQ5T2L2 129 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 TMEM78Q5T7P6 136 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 GFI1BQ5VTD9 330 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 CEMP1Q6PRD7 247 aaPredicted RBP10.6□□□□□ -0.71
USP4-212ENST00000486549 SSX7Q7RTT5 188 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 IQCF2Q8IXL9 164 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 LYPD1Q8N2G4 141 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 ODF3Q96PU9 254 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 VGLL1Q99990 258 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms