RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 AP3S1Q92572 193 aa3.28□□□□□ -1.88
UPF3A-205ENST00000479712 FAM104AQ969W3 186 aa3.28□□□□□ -1.88
UPF3A-205ENST00000479712 LINC00167Q96N53 147 aa3.28□□□□□ -1.88
UPF3A-205ENST00000479712 CAMK2N2Q96S95 79 aa3.28□□□□□ -1.88
UPF3A-205ENST00000479712 HSD17B10Q99714 261 aaKnown RBP3.28□□□□□ -1.88
UPF3A-205ENST00000479712 HSPB9Q9BQS6 159 aa3.28□□□□□ -1.88
UPF3A-205ENST00000479712 MRPS26Q9BYN8 205 aaKnown RBP3.28□□□□□ -1.88
UPF3A-205ENST00000479712 NAA50Q9GZZ1 169 aaKnown RBP3.28□□□□□ -1.88
UPF3A-205ENST00000479712 RBMX2Q9Y388 322 aaKnown RBP3.28□□□□□ -1.88
UPF3A-205ENST00000479712 PRELID3BQ9Y3B1 194 aa3.28□□□□□ -1.88
UPF3A-205ENST00000479712 A0A0U1RQV1 116 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 A0A1W2PPV4 95 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 I3L521 148 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 SNAI2O43623 268 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 IGKV1-16P04430 117 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 CD40LGP29965 261 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 INSL3P51460 131 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 TAS2R46P59540 309 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 TAS2R20P59543 309 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 CDK10Q15131 360 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 KLK9Q2XQG4 91 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 TMEM69Q5SWH9 247 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 OR4A5Q8NH83 315 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 VSTM2AQ8TAG5 236 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 MAFIPQ8WZ33 124 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 SLIRPQ9GZT3 109 aaKnown RBP3.27□□□□□ -1.89
UPF3A-205ENST00000479712 FBXL15Q9H469 300 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 PARP11Q9NR21 331 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 METTL1Q9UBP6 276 aaKnown RBP3.27□□□□□ -1.89
UPF3A-205ENST00000479712 ZNF230Q9UIE0 474 aaPredicted RBP3.27□□□□□ -1.89
UPF3A-205ENST00000479712 KLK9Q9UKQ9 250 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 KLK12Q9UKR0 248 aa3.27□□□□□ -1.89
UPF3A-205ENST00000479712 RBM7Q9Y580 266 aaKnown RBP3.27□□□□□ -1.89
UPF3A-205ENST00000479712 A0A0J9YXV3 536 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 SMIM31A0A1B0GVY4 71 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 CENPXA8MT69 81 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 G3V318 75 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 DNASE2O00115 360 aaPredicted RBP3.26□□□□□ -1.89
UPF3A-205ENST00000479712 CA2P00918 260 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 HRASP01112 189 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 PPYP01298 95 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 LGALS1P09382 135 aaKnown RBP3.26□□□□□ -1.89
UPF3A-205ENST00000479712 STAG3L2P0CL84 134 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 NFYAP23511 347 aaPredicted RBP3.26□□□□□ -1.89
UPF3A-205ENST00000479712 PRSS3P35030 304 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 RCVRNP35243 200 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 TMBIM6P55061 237 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 NCS1P62166 190 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 MRPS10P82664 201 aaKnown RBP3.26□□□□□ -1.89
UPF3A-205ENST00000479712 SSBP1Q04837 148 aaKnown RBP3.26□□□□□ -1.89
UPF3A-205ENST00000479712 ZNF616Q08AN1 781 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 CATR1Q13166 79 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 FXYD3Q14802 87 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 PLGLAQ15195 96 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 PRSS8Q16651 343 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 SMUG1Q53HV7 270 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 ACTBL2Q562R1 376 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 THOC7Q6I9Y2 204 aaKnown RBP3.26□□□□□ -1.89
UPF3A-205ENST00000479712 LPCAT3Q6P1A2 487 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 UNQ5815/PRO19632Q6UWF5 114 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 DRAXINQ8NBI3 349 aaPredicted RBP3.26□□□□□ -1.89
UPF3A-205ENST00000479712 OR10W1Q8NGF6 305 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 COQ8AQ8NI60 647 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 TMEM167AQ8TBQ9 72 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 RAB2BQ8WUD1 216 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 USMG5Q96IX5 58 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 SCGB3A2Q96PL1 93 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 SPIN2AQ99865 258 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 SPIN2BQ9BPZ2 258 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 NDFIP1Q9BT67 221 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 IFT46Q9NQC8 304 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 BET1LQ9NYM9 111 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 COMMD9Q9P000 198 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 LINC00527Q9UJ94 153 aa3.26□□□□□ -1.89
UPF3A-205ENST00000479712 IGHV3OR16-9A0A0B4J2B5 98 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 FAM223BA6NKX1 122 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 LINC01619G3V211 115 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 OR2A4O95047 310 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 CNIH1O95406 144 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 CRYZL1O95825 349 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 SAA1P0DJI8 122 aaPredicted RBP3.25□□□□□ -1.89
UPF3A-205ENST00000479712 NQO2P16083 231 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 S100GP29377 79 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 BMI1P35226 326 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 TGFBR1P36897 503 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 RPL5P46777 297 aaKnown RBP3.25□□□□□ -1.89
UPF3A-205ENST00000479712 TAS2R31P59538 309 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 VBP1P61758 197 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 LSM3P62310 102 aaKnown RBP3.25□□□□□ -1.89
UPF3A-205ENST00000479712 RPL30P62888 115 aaKnown RBP3.25□□□□□ -1.89
UPF3A-205ENST00000479712 CACNG7P62955 275 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 TNFRSF9Q07011 255 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 SYCNQ0VAF6 134 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 FAM223AQ8IWN6 122 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 TTC9CQ8N5M4 171 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 LFNGQ8NES3 379 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 OR11H1Q8NG94 326 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 OR5H2Q8NGV7 314 aa3.25□□□□□ -1.89
UPF3A-205ENST00000479712 OR2A7Q96R45 310 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms