RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 TMEM256Q8N2U0 113 aa15.49■□□□□ 0.07
COL9A3-211ENST00000477612 RPP25LQ8N5L8 163 aaKnown RBP15.49■□□□□ 0.07
COL9A3-211ENST00000477612 WDR61Q9GZS3 305 aaKnown RBP15.49■□□□□ 0.07
COL9A3-211ENST00000477612 DNAH10Q8IVF4 4471 aa15.49■□□□□ 0.07
COL9A3-211ENST00000477612 PRAC2D3DTV9 90 aa15.48■□□□□ 0.07
COL9A3-211ENST00000477612 SSNA1O43805 119 aa15.48■□□□□ 0.07
COL9A3-211ENST00000477612 THAP6Q8TBB0 222 aa15.48■□□□□ 0.07
COL9A3-211ENST00000477612 PPP1R14DQ9NXH3 145 aa15.48■□□□□ 0.07
COL9A3-211ENST00000477612 FRAS1Q86XX4 4008 aa15.47■□□□□ 0.07
COL9A3-211ENST00000477612 TRBV19A0A075B6N1 114 aa15.47■□□□□ 0.07
COL9A3-211ENST00000477612 HIST1H1EP10412 219 aaKnown RBP15.47■□□□□ 0.07
COL9A3-211ENST00000477612 MRPL53Q96EL3 112 aaKnown RBP15.47■□□□□ 0.07
COL9A3-211ENST00000477612 FAM210BQ96KR6 192 aa15.47■□□□□ 0.07
COL9A3-211ENST00000477612 C20orf144Q9BQM9 153 aa15.47■□□□□ 0.07
COL9A3-211ENST00000477612 ZNF705GA8MUZ8 300 aaPredicted RBP15.46■□□□□ 0.07
COL9A3-211ENST00000477612 PRM2P04554 102 aa15.46■□□□□ 0.07
COL9A3-211ENST00000477612 PET100P0DJ07 73 aa15.46■□□□□ 0.07
COL9A3-211ENST00000477612 PDE6HQ13956 83 aa15.46■□□□□ 0.07
COL9A3-211ENST00000477612 GCSAMLQ5JQS6 135 aa15.46■□□□□ 0.07
COL9A3-211ENST00000477612 OR10J6PQ8NGY7 276 aa15.46■□□□□ 0.07
COL9A3-211ENST00000477612 PLA2G2EQ9NZK7 142 aa15.46■□□□□ 0.07
COL9A3-211ENST00000477612 PLAC8L1A1L4L8 177 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 LYRM9A8MSI8 78 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 NDUFB4O95168 129 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 PRB4P10163 310 aaPredicted RBP15.45■□□□□ 0.06
COL9A3-211ENST00000477612 TAS2R60P59551 318 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 CLINT1Q14677 625 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 FAM167A-AS1Q96KT0 104 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 ODF3Q96PU9 254 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 NDUFAF3Q9BU61 184 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 KCNIP2Q9NS61 270 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 HSPB11Q9Y547 144 aa15.45■□□□□ 0.06
COL9A3-211ENST00000477612 AZU1P20160 251 aa15.44■□□□□ 0.06
COL9A3-211ENST00000477612 LINC01587Q99440 93 aa15.44■□□□□ 0.06
COL9A3-211ENST00000477612 ATP5SQ99766 215 aa15.44■□□□□ 0.06
COL9A3-211ENST00000477612 SLC25A2Q9BXI2 301 aa15.44■□□□□ 0.06
COL9A3-211ENST00000477612 PRELID1Q9Y255 219 aa15.44■□□□□ 0.06
COL9A3-211ENST00000477612 NPIPB6E9PJ23 425 aa15.43■□□□□ 0.06
COL9A3-211ENST00000477612 C17orf112F2Z3M2 114 aa15.42■□□□□ 0.06
COL9A3-211ENST00000477612 CT45A10P0DMU9 189 aa15.42■□□□□ 0.06
COL9A3-211ENST00000477612 PYYP10082 97 aa15.42■□□□□ 0.06
COL9A3-211ENST00000477612 RPL12P30050 165 aaKnown RBP15.42■□□□□ 0.06
COL9A3-211ENST00000477612 DAD1P61803 113 aa15.42■□□□□ 0.06
COL9A3-211ENST00000477612 MRPL32Q9BYC8 188 aaKnown RBP15.42■□□□□ 0.06
COL9A3-211ENST00000477612 H7BYZ3 331 aa15.41■□□□□ 0.06
COL9A3-211ENST00000477612 PTTG1O95997 202 aa15.41■□□□□ 0.06
COL9A3-211ENST00000477612 KIR3DS1Q14943 382 aa15.41■□□□□ 0.06
COL9A3-211ENST00000477612 ZNF493Q6ZR52 646 aa15.41■□□□□ 0.06
COL9A3-211ENST00000477612 MIR17HGQ75NE6 70 aa15.41■□□□□ 0.06
COL9A3-211ENST00000477612 C16orf74Q96GX8 76 aa15.41■□□□□ 0.06
COL9A3-211ENST00000477612 M0R3E3 92 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 P0DMU3 169 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 FAM231AP0DMU4 169 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 FAM231CP0DMU5 169 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 GFI1BQ5VTD9 330 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 PARD6GQ9BYG4 376 aaPredicted RBP15.4■□□□□ 0.06
COL9A3-211ENST00000477612 OR51M1Q9H341 326 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 MBD2Q9UBB5 411 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 FUT9Q9Y231 359 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 TIMM9Q9Y5J7 89 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 ALG5Q9Y673 324 aa15.4■□□□□ 0.06
COL9A3-211ENST00000477612 NBEAP1P0C6P0 100 aa15.39■□□□□ 0.05
COL9A3-211ENST00000477612 RNASE8Q8TDE3 154 aaKnown RBP15.39■□□□□ 0.05
COL9A3-211ENST00000477612 LEPP41159 167 aa15.38■□□□□ 0.05
COL9A3-211ENST00000477612 TMEM263Q8WUH6 116 aaKnown RBP15.38■□□□□ 0.05
COL9A3-211ENST00000477612 BLNKQ8WV28 456 aa15.38■□□□□ 0.05
COL9A3-211ENST00000477612 FAM19A4Q96LR4 140 aa15.38■□□□□ 0.05
COL9A3-211ENST00000477612 LINC00477Q96M19 166 aa15.38■□□□□ 0.05
COL9A3-211ENST00000477612 AAMDCQ9H7C9 122 aa15.38■□□□□ 0.05
COL9A3-211ENST00000477612 EXOC3-AS1Q8N2X6 119 aa15.37■□□□□ 0.05
COL9A3-211ENST00000477612 POM121L12Q8N7R1 296 aa15.37■□□□□ 0.05
COL9A3-211ENST00000477612 FXYD5Q96DB9 178 aa15.37■□□□□ 0.05
COL9A3-211ENST00000477612 TIMM8BQ9Y5J9 83 aaPredicted RBP15.37■□□□□ 0.05
COL9A3-211ENST00000477612 IFNA5P01569 189 aa15.36■□□□□ 0.05
COL9A3-211ENST00000477612 C9orf47Q6ZRZ4 202 aa15.36■□□□□ 0.05
COL9A3-211ENST00000477612 SCGB1C1Q8TD33 95 aa15.36■□□□□ 0.05
COL9A3-211ENST00000477612 RNF141Q8WVD5 230 aa15.36■□□□□ 0.05
COL9A3-211ENST00000477612 PAXXQ9BUH6 204 aa15.36■□□□□ 0.05
COL9A3-211ENST00000477612 KLLNB2CW77 178 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 SLC25A5P05141 298 aaKnown RBP15.35■□□□□ 0.05
COL9A3-211ENST00000477612 HTN1P15515 57 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 ICAM4Q14773 271 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 FCN2Q15485 313 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 FFAR4Q5NUL3 377 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 ZNF503Q96F45 646 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 SMIM3Q9BZL3 60 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 AGPAT4-IT1Q9H0P7 198 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 WFDC1Q9HC57 220 aa15.35■□□□□ 0.05
COL9A3-211ENST00000477612 CBY3A6NI87 242 aa15.34■□□□□ 0.05
COL9A3-211ENST00000477612 HTN3P15516 51 aa15.34■□□□□ 0.05
COL9A3-211ENST00000477612 ERCC8Q13216 396 aa15.34■□□□□ 0.05
COL9A3-211ENST00000477612 LYPD1Q8N2G4 141 aa15.34■□□□□ 0.05
COL9A3-211ENST00000477612 LINC00612Q8N6U2 182 aa15.34■□□□□ 0.05
COL9A3-211ENST00000477612 PYGO2Q9BRQ0 406 aa15.34■□□□□ 0.05
COL9A3-211ENST00000477612 NACAE9PAV3 2078 aa15.34■□□□□ 0.05
COL9A3-211ENST00000477612 NMBP08949 121 aa15.33■□□□□ 0.04
COL9A3-211ENST00000477612 DEFB130BP0DP73 79 aa15.33■□□□□ 0.04
COL9A3-211ENST00000477612 DEFB130AP0DP74 79 aa15.33■□□□□ 0.04
COL9A3-211ENST00000477612 CRISP2P16562 243 aa15.33■□□□□ 0.04
COL9A3-211ENST00000477612 TMEM88Q6PEY1 159 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms