RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 C4orf48Q5BLP8 95 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 SPINK9Q5DT21 86 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 DNLZQ5SXM8 178 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 XP32Q5T750 250 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 EBLN2Q6P2I7 272 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 ZNF493Q6ZR52 646 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 MRPL52Q86TS9 123 aaKnown RBP3.03□□□□□ -1.92
USP4-209ENST00000475873 ARRDC1Q8N5I2 433 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 DMBX1Q8NFW5 382 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 OR1L4Q8NGR5 311 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 OR6F1Q8NGZ6 308 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 OR4X1Q8NH49 305 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 LGALS14Q8TCE9 139 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 TMEM230Q96A57 120 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 PTH2Q96A98 100 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 GABARAPL1Q9H0R8 117 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 RBM38Q9H0Z9 239 aaKnown RBP3.03□□□□□ -1.92
USP4-209ENST00000475873 MCUBQ9NWR8 336 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 KLK11Q9UBX7 282 aa3.03□□□□□ -1.92
USP4-209ENST00000475873 TRAV5A0A0B4J249 113 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 RNF222A6NCQ9 220 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 CENPXA8MT69 81 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 K7EQD1 137 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 ISLRO14498 428 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 RLN2P04090 185 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 NPSP0C0P6 89 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 OR10J4P0C629 311 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 PTHLHP12272 177 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 S100A11P31949 105 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 G6PCP35575 357 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 ETV6P41212 452 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 RANP62826 216 aaKnown RBP3.02□□□□□ -1.93
USP4-209ENST00000475873 VWC2Q2TAL6 325 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 LINC01559Q495D7 138 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 PDZD11Q5EBL8 140 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 LINC01556Q5JQF7 62 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 DMRTA1Q5VZB9 504 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 IGFL4Q6B9Z1 124 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 NEGR1Q7Z3B1 354 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 C12orf45Q8N5I9 185 aaPredicted RBP3.02□□□□□ -1.93
USP4-209ENST00000475873 OR51H1Q8NH63 302 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 OR4A16Q8NH70 328 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 TRUB1Q8WWH5 349 aaKnown RBP3.02□□□□□ -1.93
USP4-209ENST00000475873 TMEM37Q8WXS4 190 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 RAB3CQ96E17 227 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 DNAJC30Q96LL9 226 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 URM1Q9BTM9 101 aaKnown RBP3.02□□□□□ -1.93
USP4-209ENST00000475873 CTDSP1Q9GZU7 261 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 DPH3P1Q9H4G8 78 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 MRPS18AQ9NVS2 196 aaKnown RBP3.02□□□□□ -1.93
USP4-209ENST00000475873 COMMD9Q9P000 198 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 RAB26Q9ULW5 256 aa3.02□□□□□ -1.93
USP4-209ENST00000475873 C14orf166Q9Y224 244 aaKnown RBP3.02□□□□□ -1.93
USP4-209ENST00000475873 TRAV8-2A0A0B4J237 113 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 IGHV3-38A0A0C4DH36 116 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 TCRBV3S1A0A5B6 114 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 SSNA1O43805 119 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 KRASP01116 189 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 IGHV3-53P01767 116 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 IL4P05112 153 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 RNASE2P10153 161 aaKnown RBP3.01□□□□□ -1.93
USP4-209ENST00000475873 GYPEP15421 78 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 RAB5BP61020 215 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 DAZ2Q13117 558 aaKnown RBP3.01□□□□□ -1.93
USP4-209ENST00000475873 FHL2Q14192 279 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 ZNF846Q147U1 533 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 IZUMO4Q1ZYL8 232 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 C6orf226Q5I0X4 101 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 MORN5Q5VZ52 161 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 ATRAIDQ6UW56 229 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 ZNF818PQ6ZRF7 136 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 AHSA2Q719I0 299 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 LYSMD2Q8IV50 215 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 LGI3Q8N145 548 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 TMEM256Q8N2U0 113 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 C9orf62Q8N4C0 152 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 EIF4E3Q8N5X7 224 aaKnown RBP3.01□□□□□ -1.93
USP4-209ENST00000475873 RNF182Q8N6D2 247 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 SECTM1Q8WVN6 248 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 FCAMRQ8WWV6 532 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 SLC35E1Q96K37 410 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 C8orf49Q96NF6 230 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 CCDC32Q9BV29 185 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 MAP1LC3CQ9BXW4 147 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 Q9H521 79 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 KIF25-AS1Q9Y6Z4 181 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
USP4-209ENST00000475873 FCGBPQ9Y6R7 5405 aaPredicted RBP3□□□□□ -1.93
USP4-209ENST00000475873 KRBOX1C9JBD0 128 aa3□□□□□ -1.93
USP4-209ENST00000475873 PHOX2AO14813 284 aa3□□□□□ -1.93
USP4-209ENST00000475873 IGHV3-30P01768 117 aa3□□□□□ -1.93
USP4-209ENST00000475873 IGHV3-33P01772 117 aa3□□□□□ -1.93
USP4-209ENST00000475873 SMIM18P0DKX4 95 aa3□□□□□ -1.93
USP4-209ENST00000475873 IGHV3-30-3P0DP02 117 aa3□□□□□ -1.93
USP4-209ENST00000475873 IGHV3-30-5P0DP03 117 aa3□□□□□ -1.93
USP4-209ENST00000475873 IL7P13232 177 aa3□□□□□ -1.93
USP4-209ENST00000475873 HIST1H1DP16402 221 aaKnown RBP3□□□□□ -1.93
USP4-209ENST00000475873 RAB6AP20340 208 aa3□□□□□ -1.93
USP4-209ENST00000475873 PMCHP20382 165 aa3□□□□□ -1.93
USP4-209ENST00000475873 F2RP25116 425 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms