RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 DYDC1Q8WWB3 177 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 BORCS8Q96FH0 119 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 OTORQ9NRC9 128 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 MED11Q9P086 117 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 RTL9Q8NET4 1388 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 TRDV1A0A1B0GX56 115 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 IGLV3-1P01715 115 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 MT-ND6P03923 174 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 ZCCHC11Q5TAX3 1644 aaKnown RBP0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 DCUN1D2Q6PH85 259 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 GLIPR1L1Q6UWM5 242 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 LINC00575Q6W349 94 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 TAF9BQ9HBM6 251 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 IL20Q9NYY1 176 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 TRAPPC8Q9Y2L5 1435 aa0.51□□□□□ -2.33
CCDC88A-212ENST00000474059 CNTRLQ7Z7A1 2325 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 CITO14578 2027 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 TRAV23DV6A0A075B6W5 121 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 MAP1LC3B2A6NCE7 125 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 H3BQV1 296 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 H7BYZ3 331 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 KPNA4O00629 521 aaPredicted RBP0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 CD14P08571 375 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 MIR22HGQ0VDD5 57 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 VMA21Q3ZAQ7 101 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 SPATA45Q537H7 98 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 FOXI2Q6ZQN5 318 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 PCBD2Q9H0N5 130 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 LRTM1Q9HBL6 345 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 LAMTOR3Q9UHA4 124 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 NUBP2Q9Y5Y2 271 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 MYO18AQ92614 2054 aaKnown RBP0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 CHD3Q12873 2000 aaKnown RBP0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 PTPRDP23468 1912 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 NOTCH1P46531 2555 aa0.5□□□□□ -2.33
CCDC88A-212ENST00000474059 MUC5BQ9HC84 5762 aaPredicted RBP0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 KIAA1107Q9UPP5 1409 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 A0A096LPI6 279 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 FABP2P12104 132 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 TMEM78Q5T7P6 136 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 KRTAP19-3Q7Z4W3 81 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 ANGPTL5Q86XS5 388 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 LINC00269Q8N2A0 174 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 OR10AC1Q8NH08 325 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 LIMD2Q9BT23 127 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 CST11Q9H112 138 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 TCEAL2Q9H3H9 227 aaPredicted RBP0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 NAT8BQ9UHF3 227 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 HSPB8Q9UJY1 196 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 TPRKBQ9Y3C4 175 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 NUP210Q8TEM1 1887 aaPredicted RBP0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 PBRM1Q86U86 1689 aa0.49□□□□□ -2.33
CCDC88A-212ENST00000474059 GABARAPH6UMI1 98 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 IGHV3-33P01772 117 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 FABP4P15090 132 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 S100A5P33763 92 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 DIAPH2-AS1Q14236 149 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 ZCCHC23Q6ZST2 131 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 STX12Q86Y82 276 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 CCL4L1Q8NHW4 92 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 DIRC1Q969H9 104 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 MCEEQ96PE7 176 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 OR4C12Q96R67 309 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 USP54Q70EL1 1684 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 FANCMQ8IYD8 2048 aa0.48□□□□□ -2.33
CCDC88A-212ENST00000474059 BCL9O00512 1426 aa0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 A0A1W2PRE2 83 aa0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 BCL2P10415 239 aa0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 S100A11P31949 105 aa0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 MRPS36P82909 103 aaKnown RBP0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 OR4B1Q8NGF8 309 aa0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 ISOC1Q96CN7 298 aa0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 EFCAB11Q9BUY7 163 aa0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 TCOF1Q13428 1488 aaKnown RBP0.47□□□□□ -2.33
CCDC88A-212ENST00000474059 UNC13CQ8NB66 2214 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 SNRNP200O75643 2136 aaKnown RBP0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 TET1Q8NFU7 2136 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 ZNF469Q96JG9 3925 aaPredicted RBP0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 K7EIL1 84 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 FABP1P07148 127 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 SDC2P34741 201 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 OCIAD2Q56VL3 154 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 HRCT1Q6UXD1 115 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 LINC00299Q6ZSB3 139 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 OR5H6Q8NGV6 325 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 NIT2Q9NQR4 276 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 SMPXQ9UHP9 88 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 ATPIF1Q9UII2 106 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 LAMTOR2Q9Y2Q5 125 aa0.46□□□□□ -2.34
CCDC88A-212ENST00000474059 KIAA1549LQ6ZVL6 1849 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 DLC1Q96QB1 1528 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 A0A0J9YY99 117 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 NUPR2A6NF83 97 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 C5orf58C9J3I9 102 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 PFDN1O60925 122 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 FREM3P0C091 2139 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 NEFHP12036 1026 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 FOXA3P55318 350 aaPredicted RBP0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 FXYD4P59646 89 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 NEDD8Q15843 81 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms