RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 TAS2R60P59551 318 aa11.71□□□□□ -0.53
USP40-212ENST00000473191 BAXQ07812 192 aa11.71□□□□□ -0.53
USP40-212ENST00000473191 GFI1BQ5VTD9 330 aa11.71□□□□□ -0.53
USP40-212ENST00000473191 RNASE8Q8TDE3 154 aaKnown RBP11.71□□□□□ -0.53
USP40-212ENST00000473191 SLC39A9Q9NUM3 307 aa11.71□□□□□ -0.53
USP40-212ENST00000473191 PRSS29PA6NIE9 313 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 CT45A10P0DMU9 189 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 B2MP61769 119 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 NHLH2Q02577 135 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 ASAH1Q13510 395 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 LGALS9BQ3B8N2 356 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 Q6ZRG5 221 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 S100A7AQ86SG5 101 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 NOP10Q9NPE3 64 aaKnown RBP11.7□□□□□ -0.54
USP40-212ENST00000473191 PXMP4Q9Y6I8 212 aa11.7□□□□□ -0.54
USP40-212ENST00000473191 F5H768 121 aa11.69□□□□□ -0.54
USP40-212ENST00000473191 M0R3E3 92 aa11.69□□□□□ -0.54
USP40-212ENST00000473191 PYYP10082 97 aa11.69□□□□□ -0.54
USP40-212ENST00000473191 PVALBP20472 110 aaPredicted RBP11.69□□□□□ -0.54
USP40-212ENST00000473191 FGF7P21781 194 aa11.69□□□□□ -0.54
USP40-212ENST00000473191 RPL29P47914 159 aaKnown RBP11.69□□□□□ -0.54
USP40-212ENST00000473191 LINC00336Q6ZUF6 198 aa11.69□□□□□ -0.54
USP40-212ENST00000473191 TMEM256Q8N2U0 113 aa11.69□□□□□ -0.54
USP40-212ENST00000473191 OR5AC2Q9NZP5 309 aa11.69□□□□□ -0.54
USP40-212ENST00000473191 DNAH11Q96DT5 4516 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 H0YIZ8 118 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 NDUFB4O95168 129 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 S100A11P31949 105 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 ERCC8Q13216 396 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 RAB31Q13636 194 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 THAP6Q8TBB0 222 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 C16orf74Q96GX8 76 aa11.68□□□□□ -0.54
USP40-212ENST00000473191 GPN1Q9HCN4 374 aaPredicted RBP11.68□□□□□ -0.54
USP40-212ENST00000473191 RNF212Q495C1 297 aa11.67□□□□□ -0.54
USP40-212ENST00000473191 LRRC37A5PQ49AS3 106 aa11.67□□□□□ -0.54
USP40-212ENST00000473191 OR1L4Q8NGR5 311 aa11.67□□□□□ -0.54
USP40-212ENST00000473191 OR10J6PQ8NGY7 276 aa11.67□□□□□ -0.54
USP40-212ENST00000473191 TMEM263Q8WUH6 116 aaKnown RBP11.67□□□□□ -0.54
USP40-212ENST00000473191 RNF24Q9Y225 148 aa11.67□□□□□ -0.54
USP40-212ENST00000473191 TIMM8BQ9Y5J9 83 aaPredicted RBP11.67□□□□□ -0.54
USP40-212ENST00000473191 TRBV19A0A075B6N1 114 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 TRAV12-3A0A0B4J271 114 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 NPIPB6E9PJ23 425 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 H7BYZ3 331 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 UPK1BO75841 260 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 NUDT3O95989 172 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 MZT2BQ6NZ67 158 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 STX12Q86Y82 276 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 EXOC3-AS1Q8N2X6 119 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 CHAC2Q8WUX2 184 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 RNF141Q8WVD5 230 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 PFDN5Q99471 154 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 SLC25A2Q9BXI2 301 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 NPCDR1Q9BY65 106 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 PCLOQ9Y6V0 5065 aa11.66□□□□□ -0.54
USP40-212ENST00000473191 CBY3A6NI87 242 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 ATP5G1P05496 136 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 ATP5G3P48201 142 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 Q6ZQT7 251 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 MIR17HGQ75NE6 70 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 C15orf53Q8NAA6 179 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 OR5C1Q8NGR4 320 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 ENKURQ8TC29 256 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 BLNKQ8WV28 456 aa11.65□□□□□ -0.54
USP40-212ENST00000473191 HOXA5P20719 270 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 DEFA1P59665 94 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 DEFA3P59666 94 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 HBG1P69891 147 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 HBG2P69892 147 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 GUK1Q16774 197 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 LINC00612Q8N6U2 182 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 FAM167A-AS1Q96KT0 104 aa11.64□□□□□ -0.55
USP40-212ENST00000473191 GAGE12BA1L429 117 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 GAGE7O76087 117 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 GAGE12FP0CL80 117 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 GAGE12GP0CL81 117 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 GAGE12IP0CL82 117 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 H2BFSP57053 126 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 CD300CQ08708 224 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 CLINT1Q14677 625 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 ATP6V1FQ16864 119 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 ZNF493Q6ZR52 646 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 ZNRF2Q8NHG8 242 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 C20orf144Q9BQM9 153 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 AGPAT4-IT1Q9H0P7 198 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 TMEM14CQ9P0S9 112 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 LINC00588Q9Y4M8 146 aa11.63□□□□□ -0.55
USP40-212ENST00000473191 IGKV2-40A0A087WW87 121 aaPredicted RBP11.62□□□□□ -0.55
USP40-212ENST00000473191 ZNF253O75346 499 aa11.62□□□□□ -0.55
USP40-212ENST00000473191 IGKV2D-40P01614 121 aaPredicted RBP11.62□□□□□ -0.55
USP40-212ENST00000473191 HIST1H1EP10412 219 aaKnown RBP11.62□□□□□ -0.55
USP40-212ENST00000473191 BTN1A1Q13410 526 aa11.62□□□□□ -0.55
USP40-212ENST00000473191 PRR9Q5T870 116 aa11.62□□□□□ -0.55
USP40-212ENST00000473191 FAM19A4Q96LR4 140 aa11.62□□□□□ -0.55
USP40-212ENST00000473191 ODF3Q96PU9 254 aa11.62□□□□□ -0.55
USP40-212ENST00000473191 ATG101Q9BSB4 218 aa11.62□□□□□ -0.55
USP40-212ENST00000473191 A0A0J9YY99 117 aa11.61□□□□□ -0.55
USP40-212ENST00000473191 EIF3GO75821 320 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP40-212ENST00000473191 LEPP41159 167 aa11.61□□□□□ -0.55
USP40-212ENST00000473191 OR5I1Q13606 314 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms